View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_high_1 (Length: 837)
Name: NF2734_high_1
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 50339018 - 50339284
Alignment:
| Q |
18 |
agatctagtgttgtatattgatttccaactgaaattcaatnnnnnnnn-tctgttatccatatggaccaaagatagacattactaccaaagaaggttctt |
116 |
Q |
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| T |
50339018 |
agatctagtgttgtatattgatttccaactgaaattcaataaaaaaaaatctgttatccatatggaccaaagatagacattactaccaaagaaggttctt |
50339117 |
T |
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| Q |
117 |
taaacggtgaataactagctagatagacatttagtgtatttatattttgcacaccagaattaagagttattttttgataaaaaagtgatggctcaatgat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
50339118 |
taaacggtgaataactagctagatagacatttagtgtatttatattttgcacaccagaattaagagttatttttttat-aaaaagtgatggctcaatgat |
50339216 |
T |
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| Q |
217 |
gaaaaggttgggtggatattggcagttccgccatatctgtttggattatttgcgatgttttgcttatt |
284 |
Q |
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| T |
50339217 |
gaaaaggttgggtggatattggcagttccgccatatctgtttggattatttgcgatgttttgcttatt |
50339284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 706 - 827
Target Start/End: Original strand, 50339280 - 50339401
Alignment:
| Q |
706 |
ttattggcaaagttgtcatcctaatgataatattcggaaagataagaataatagtttagcaaaacaatctcgtaaggacaacttaaatgataaaaggttc |
805 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50339280 |
ttattggaaaagttgtcatcctaatgataatattcggaaagataagaataatagtttagcaaaacaatctcgtaaggacaacttaaatgataaaaggttc |
50339379 |
T |
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| Q |
806 |
taagatatattgaatttttcat |
827 |
Q |
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| T |
50339380 |
taagatatattgaatttttcat |
50339401 |
T |
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