View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_high_11 (Length: 389)
Name: NF2734_high_11
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 54917087 - 54917455
Alignment:
| Q |
11 |
agaaatgaatccatgagacaaacttaaagtcattgagtctttcaaccttattctaggtgggttttttatatgcgagtacacaggtgttgctttgacaaaa |
110 |
Q |
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| T |
54917087 |
agaaataaatccatgagacaaacttaaagtcattgagtctttcaaccttattttaggtggggtttttatatgcaagtacacaggtgttgctttgacaaaa |
54917186 |
T |
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| Q |
111 |
gaacaaacacaaactttgactaggaaagtcggtggtaactcgttaatatatccaaaacggtttttgaatactaggcaagagtaacaatgggatgatttat |
210 |
Q |
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| T |
54917187 |
gaacaaacacaaactttgactaggaaagtcggtggtaactcgttaatatatccaaaacggtttttgaatactaggcaagattaacaatgggatgatttat |
54917286 |
T |
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| Q |
211 |
ctatgatatgcgctaatcatgtgagttcctcctataatcatatcctcctttaggtttttctttggatatgtcaacaatgaggaatgtttctagcaataca |
310 |
Q |
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| T |
54917287 |
ctatgatatacgctaatcatgtgagttcctcctataatcatatcctcctttaggtttttctttggatatgtcaacaatgaggaatgtttctagcaataca |
54917386 |
T |
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| Q |
311 |
agtcagagaccaacttccaatgcgtttgttcagtttgatcaccataatttgaatttccctcaccctatg |
379 |
Q |
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| T |
54917387 |
agtcagagaccaacttccaatgcgcttgttcagtttcatcaccataatttgaatttccctcaccttatg |
54917455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 54911800 - 54911944
Alignment:
| Q |
88 |
acacaggtgttgctttgacaaaagaacaaacacaaactttgactaggaaagtcggtggtaactcgttaatatatccaaaacggtttttgaatactaggca |
187 |
Q |
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| T |
54911800 |
acacaggggttgttttgactaaggagcaagcacaaactttgactaggaatgcgggtggtaattcattggtatatccaaatcaggttttgaatactagatg |
54911899 |
T |
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| Q |
188 |
agagtaacaatgggatgatttatctatgatatgcgctaatcatgtg |
233 |
Q |
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| T |
54911900 |
gga-aaacaatgggatgatttgtttatgatacacgctaatcatgtg |
54911944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 54918059 - 54917986
Alignment:
| Q |
145 |
gtaactcgttaatatatccaaaacggtttttgaatactaggcaagagtaacaatgggatgatttatctatgata |
218 |
Q |
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| T |
54918059 |
gtaactcgttgatatatccataacgatttttgaatactaggtgggatgaacaatggggtgatttgtctctgata |
54917986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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