View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_high_12 (Length: 383)
Name: NF2734_high_12
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 153 - 372
Target Start/End: Original strand, 27692025 - 27692243
Alignment:
| Q |
153 |
aaaagtaaagaagcaaaaattcatggnnnnnnnnnntagtacttatctactggtacttttcaattttgcatgataattggaaccaatagcattagtttca |
252 |
Q |
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| T |
27692025 |
aaaagtaaagaagcaaaaattcatggaaaaaaaaa-tagtacttatctactagtactcttcaattttgcatgataattggaaccaatagcattagtttca |
27692123 |
T |
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| Q |
253 |
ctcacttggtgattgcacctcctctactgacatcctttgccaagttaagagagattgaggatcaggtggaaggtgttgaggaacttcatctccttcaagc |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
27692124 |
ctcacttggtgattgcacctcctctactgacatcctttgccaagttaagagagattgaggatcaggtggaaggtgctgtggaacttcatctccttcaagc |
27692223 |
T |
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| Q |
353 |
atatctatcacttcattcat |
372 |
Q |
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|||||||||||||||||||| |
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| T |
27692224 |
atatctatcacttcattcat |
27692243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 27676669 - 27676811
Alignment:
| Q |
16 |
atttacaatggagaatttctttttagaagagtaagatttattgaatcaatggtaggaacaacttttgcgtataattaatgcaagatatatgtcccttata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27676669 |
atttacaatggagaatttctttttagaagagtaagatttattgaatcaatggtaggaacaacttttgcgtataattaatgcaagatatatgtcccttata |
27676768 |
T |
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| Q |
116 |
cgctataaacatgacctctaaagtagcatatgctaataaaagt |
158 |
Q |
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| T |
27676769 |
cgctataaacatgacctctaaagtagcatatgctaataaaagt |
27676811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 35730643 - 35730711
Alignment:
| Q |
279 |
ctgacatcctttgccaagttaagagagattgaggatcaggtggaaggtgttgaggaacttcatctcctt |
347 |
Q |
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||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
35730643 |
ctgacgtcctttgccaggttaagagagattcaggatcaggtggaaggtgttgtggaacttcatctcctt |
35730711 |
T |
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