View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2734_high_19 (Length: 306)
Name: NF2734_high_19
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 9554430 - 9554713
Alignment:
| Q |
16 |
attggtgctaaggtaactgataaaactgcgtagggtttcgaccagttttcctcactcacaaccggtatagtgagttttcttggtaaacaaagtggtaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9554430 |
attggtgctaaggtaactgataaaactgcgtagggtttcgaccagttttcctcactcacaaccggtatagtgagttttcttggtaaacaaagtggtaatt |
9554529 |
T |
|
| Q |
116 |
caagtacttctagaaacttccacaagtaataggtactaaaaatttctttcttctcctcttttacttcaatactttgtataatcgatttatgaggagaatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
9554530 |
caagtacttctagaaacttccacaagtaataggtactaaaaatttctttcttctcctcttttacttcaatactttgtaaaatcggtttctgaggagaatc |
9554629 |
T |
|
| Q |
216 |
att------atcagtatcatcgtcggcataacccaataatggtatgccggattcaactaaatcatcacaagatgatgaagattc |
293 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9554630 |
attatcatgatcagtatcatcgtcggcataacccaataatggtatgccggattcaactaaatcatcacaagatgatgaagattc |
9554713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University