View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_high_3 (Length: 528)
Name: NF2734_high_3
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 8 - 511
Target Start/End: Original strand, 4067155 - 4067658
Alignment:
| Q |
8 |
gagtgagatgaaggatttgacaattgttcagggcgaagaggctcccaaaatttgcgaaaaattgaaggatgaccatcttttcgatactcagaaagttgag |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4067155 |
gagtaagatgaaggatttgacaattgttcagggcgaagaggctcccaaaatttgcgaaaaattgaaggatgaccatcttttcgatactcagaaagttgag |
4067254 |
T |
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| Q |
108 |
taacattcaggacagaaacttttgaatttaaactgcttaggatgttctccacagagctcattgttggcaaatcagaaccacttccccaatagctctcgac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4067255 |
taacattcaggacagaaacttttgaatttaaactgcttaggatgttctccacagagctcattgttggcaaatcagaaccacttccccaatagctctcgac |
4067354 |
T |
|
| Q |
208 |
atcaataggtttcttctcaccgtaacaatttccttcactttctggattccactctcggctcctaaatgagaaaaggttcaattgaatagtttagtatgat |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4067355 |
atcaataggtttcttctcgccgtaacaatttccttcactttctggattccactctcggctcctaaatgagaaaaggttcaattgaatagtttagtatgat |
4067454 |
T |
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| Q |
308 |
caccttgtattatacaaaggggatgcacaaatatatacacacacgagaaaataactaaaaaggaaaaataataatctaagaaaactgtatcaaagatttt |
407 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4067455 |
caccttgtattatacaaaggggatgcacaaatatacacacacacgagaaaataactaaaaaggaaaaataataatctaagaaaactgtgtcaaagatttt |
4067554 |
T |
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| Q |
408 |
aaatagggagaataatcctaatcactactataatcaacatgttcaattcaatgtaaaaatatagtctgtggtatttggattcctaatgttcggatactat |
507 |
Q |
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| T |
4067555 |
aaatagggagaataatcctaatcactactataatcaacatgttcaattcaatgtaaaaatatagtctgtggtatttggattcctaatgttcggatactat |
4067654 |
T |
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| Q |
508 |
aaag |
511 |
Q |
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|||| |
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| T |
4067655 |
aaag |
4067658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 23297909 - 23297962
Alignment:
| Q |
370 |
gaaaaataataatctaagaaaactgtatcaaagattttaaatagggagaataat |
423 |
Q |
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|||||||||||||||||| ||||||||| || | | |||||||| ||||||||| |
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| T |
23297909 |
gaaaaataataatctaaggaaactgtataaacgttattaaatagtgagaataat |
23297962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 20996033 - 20995980
Alignment:
| Q |
295 |
agtttagtatgatcaccttgtattatacaaaggggatgcacaaatatatacaca |
348 |
Q |
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| T |
20996033 |
agtttagaatgatcaacttgtattacacaaaggggatgaacaaatatatacaca |
20995980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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