View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2734_high_5 (Length: 495)

Name: NF2734_high_5
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2734_high_5
NF2734_high_5
[»] chr3 (3 HSPs)
chr3 (159-271)||(36153810-36153922)
chr3 (355-427)||(3523823-3523895)
chr3 (353-412)||(36153669-36153728)
[»] chr8 (3 HSPs)
chr8 (162-271)||(16797061-16797170)
chr8 (162-271)||(18207524-18207633)
chr8 (353-414)||(16796934-16796995)
[»] chr1 (2 HSPs)
chr1 (162-271)||(47722823-47722932)
chr1 (162-271)||(47729815-47729924)
[»] chr7 (1 HSPs)
chr7 (162-271)||(18001032-18001141)
[»] chr6 (1 HSPs)
chr6 (162-283)||(2269804-2269926)
[»] chr5 (2 HSPs)
chr5 (1-58)||(22919634-22919691)
chr5 (353-385)||(34453477-34453509)
[»] chr4 (1 HSPs)
chr4 (162-254)||(13103055-13103147)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 271
Target Start/End: Complemental strand, 36153922 - 36153810
Alignment:
Q  159 actcacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaa 258  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||| |||||||| |      
T  36153922 actcacatattcaacgttgatttcaaccatgtatgtcctatacttcaggcgtagctcgttgatcctcctatccatttcagtcactggattgggatcaagt 36153823  T
Q  259 ggtgctgcaaaaa 271  Q
    ||| |||||||||    
T  36153822 ggttctgcaaaaa 36153810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 3523823 - 3523895
Alignment:
Q  355 acataccaatcaacatgttataagagagcatggatcggatgttatggtggaaaaccatgtttgatttcgtgac 427  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  3523823 acataccaatcaacatgttataagagagcatggatgggatgttatggtggaaagccatgtttgatttcatgac 3523895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 36153728 - 36153669
Alignment:
Q  353 atacataccaatcaacatgttataagagagcatggatcggatgttatggtggaaaaccat 412  Q
    ||||||||||||||||||||| ||||||||||| |   ||||||||||||||||| ||||    
T  36153728 atacataccaatcaacatgttgtaagagagcatcgcctggatgttatggtggaaagccat 36153669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 16797170 - 16797061
Alignment:
Q  162 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 261  Q
    ||||||||||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||  | ||||| |||||||| |  |||    
T  16797170 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttcggtcactggattgggatcaagtggt 16797071  T
Q  262 gctgcaaaaa 271  Q
    ||||||||||    
T  16797070 gctgcaaaaa 16797061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 18207633 - 18207524
Alignment:
Q  162 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 261  Q
    ||||||||||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||  | ||||| |||||||| |  |||    
T  18207633 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttcggtcactggattgggatcaagtggt 18207534  T
Q  262 gctgcaaaaa 271  Q
    ||||||||||    
T  18207533 gctgcaaaaa 18207524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 16796995 - 16796934
Alignment:
Q  353 atacataccaatcaacatgttataagagagcatggatcggatgttatggtggaaaaccatgt 414  Q
    ||||||||||||||||||||| ||||||||||| |    | |||||||||||||| ||||||    
T  16796995 atacataccaatcaacatgttgtaagagagcatcgccacgttgttatggtggaaagccatgt 16796934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 47722932 - 47722823
Alignment:
Q  162 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 261  Q
    |||||| |||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||| | ||||| |||||||| |  |||    
T  47722932 cacatagtcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttcagtcactggattgggatcaagtggt 47722833  T
Q  262 gctgcaaaaa 271  Q
    ||||||||||    
T  47722832 gctgcaaaaa 47722823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 47729924 - 47729815
Alignment:
Q  162 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 261  Q
    |||||| |||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||  | ||||| |||||||| |  |||    
T  47729924 cacatagtcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccatttctgtcactggattgggatcaagtggt 47729825  T
Q  262 gctgcaaaaa 271  Q
    ||||||||||    
T  47729824 gctgcaaaaa 47729815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 18001141 - 18001032
Alignment:
Q  162 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 261  Q
    ||||||||||||||| |  |||||||| ||||||||||| || ||| ||||||||||||||||||||||| ||||  | ||||| |||||||| |  |||    
T  18001141 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcgtagctcgttgatcctcctatccttttctgtcactggattgggatcaagtggt 18001042  T
Q  262 gctgcaaaaa 271  Q
    ||||||||||    
T  18001041 gctgcaaaaa 18001032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 2269804 - 2269926
Alignment:
Q  162 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatccaaaggt 261  Q
    ||||||||||||||| |  ||| |||| ||||||||||| || ||| |||||||||||||| |||||||||||||  | ||||| |||||||| |  |||    
T  2269804 cacatattcaacgtcaacttcagccatgtatgtcctatacttaaggcgtagctcgttgatcttcctatccatttcggtcactggattgggatcaagtggt 2269903  T
Q  262 gctgc-aaaaatgacacaacaaa 283  Q
    ||||| |||||||||||| ||||    
T  2269904 gctgcaaaaaatgacacaccaaa 2269926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22919634 - 22919691
Alignment:
Q  1 ggtgaaatccatcaaataattttcggcagaccttttcccagtaatcttgctgcatggg 58  Q
    ||||||||||||||||  |||||| || ||||||||||||||||||||| ||||||||    
T  22919634 ggtgaaatccatcaaaacattttcagcggaccttttcccagtaatcttgttgcatggg 22919691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 34453509 - 34453477
Alignment:
Q  353 atacataccaatcaacatgttataagagagcat 385  Q
    ||||||||||||||||||||| |||||||||||    
T  34453509 atacataccaatcaacatgttgtaagagagcat 34453477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 13103055 - 13103147
Alignment:
Q  162 cacatattcaacgtcgatctcaaccatatatgtcctatatttcaggtgtagctcgttgatcctcctatccatttcaataactgggttgggatc 254  Q
    ||||||||||||||| |  |||||||| ||||||||||| || |||  |  ||||||||||||||||||||||||  | ||||| ||||||||    
T  13103055 cacatattcaacgtcaacttcaaccatgtatgtcctatacttaaggcatgactcgttgatcctcctatccatttcggtcactggattgggatc 13103147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University