View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_high_6 (Length: 488)
Name: NF2734_high_6
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 382
Target Start/End: Complemental strand, 14786016 - 14785656
Alignment:
| Q |
2 |
attttccttataacaaccaaaaacctacgctacataaaaacaaattcatctcagttacnnnnnnntccaaaatctaatgaaacgtcgttccctttctcct |
101 |
Q |
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| T |
14786016 |
attttccttataacaatcaaaaacctacgctacaaaaaaa-aaattcatctcagtaccaaaaaaatccaaaatctaatgaaacgtcgttccctttctcct |
14785918 |
T |
|
| Q |
102 |
tctcttcaagcgatgccctaaccttcgccgttcctaaccatcgccgctcccgcttcgtcatcaccgttccactttgtcagcgttgtctctgttctcaatc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14785917 |
tctcttcaagcgatgccctaaccttcgccgttcctaaccatcgccgctcccgcttcgtcatcaccgttccactttgtcagcgttgtctctgttctcaatc |
14785818 |
T |
|
| Q |
202 |
ttcttcgtcctcactctttctgtcgccgccgtttctttccgtcaccgccgtttaaaactgaaaatggtgaatcacgaagtaatgattcttggatcaagtt |
301 |
Q |
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| T |
14785817 |
ttcgtcgtcctcactctttccgtcgccgcc-------------------gtttaaaactgaaaatggtgaatcacgaagtaatggttcttggttcaagtt |
14785737 |
T |
|
| Q |
302 |
caatgatgaaattgaggtatgtctttctcatatttgttgctgttctgttgaccatatggaagtattcagcatctgggttca |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14785736 |
caatgatgaaattgaggtatgtctttctcatatttgttgctgttctgttgaccatatggaagtattcagcatctgggttca |
14785656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 75 - 382
Target Start/End: Original strand, 33571497 - 33571785
Alignment:
| Q |
75 |
ctaatgaaacgtcgttccctttctccttctcttcaagcgatgccctaaccttcgccgttcctaaccatcgccgctcccgcttcgtcatcaccgttccact |
174 |
Q |
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| T |
33571497 |
ctaatgaaccgtcgttccctttctccttctcttcatgcgatgccctaaccgtcgccgttcctaaccatcatcgttcccgcttcgtcatcaccgttccact |
33571596 |
T |
|
| Q |
175 |
ttgtcagcgttgtctctgttctcaatcttcttcgtcctcactctttctgtcgccgccgtttctttccgtcaccgccgtttaaaactgaaaatggtgaatc |
274 |
Q |
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|||||||||||||| || |||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
33571597 |
ttgtcagcgttgtcacttttctcaatcttcgtcgttctcactctttccgtcg-------------------ccgccgtttaaaactgaaaatggtgaatc |
33571677 |
T |
|
| Q |
275 |
acgaagtaatgattcttggatcaagttcaatgatgaaattgaggtatgtctttctcatatttgttgctgttctgttgaccatatggaagtattcagcatc |
374 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33571678 |
acgaagtaatgattcttggttcaagttcaatgacgaaattgaggtatgtctttctcatatttgttgctgttctgttgaccatatggaattattcagcata |
33571777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 137 - 382
Target Start/End: Original strand, 29186455 - 29186681
Alignment:
| Q |
137 |
aaccatcgccgctcccgcttcgtcatcaccgttccactttgtcagcgttgtctctgttctcaatcttcttcgtcctcactctttctgtcgccgccgtttc |
236 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| |
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| T |
29186455 |
aaccatcgtcgttcccgcttcgtcatcaccgttccactttgtcagcgttgtctctattctcaatcttcgtcgttctcactctttccgtcg---------- |
29186544 |
T |
|
| Q |
237 |
tttccgtcaccgccgtttaaaactgaaaatggtgaatcacgaagtaatgattcttggatcaagttcaatgatgaaattgaggtatgtctttctcatattt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29186545 |
---------ccgccgtttaaaactgaaaatggtgaatcacgaagtaatgattcttggttcaagttcaatgacgaaattgaggtatgtctttctcatattt |
29186635 |
T |
|
| Q |
337 |
gttgctgttctgttgaccatatggaagtattcagcatctgggttca |
382 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
29186636 |
gttgctgttttgttgaccatatggaattattcagcatctgggttca |
29186681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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