View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2734_high_8 (Length: 425)

Name: NF2734_high_8
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2734_high_8
NF2734_high_8
[»] chr5 (6 HSPs)
chr5 (14-425)||(41498180-41498595)
chr5 (193-346)||(41513530-41513682)
chr5 (193-346)||(41522496-41522648)
chr5 (49-129)||(41517526-41517606)
chr5 (217-288)||(33080315-33080386)
chr5 (49-113)||(41507949-41508013)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 41498595 - 41498180
Alignment:
Q  14 caaaggtcggattgtatgagcaagaaggccaacaacagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41498595 caaaggtcggattgtatgagcaagaaggccaacaacagggtctagtgggagtgagttagttattttttagtgtcaagaaagagtactgaatgagagtggt 41498496  T
Q  114 taagtagggaaggttaaatggtgtctgcaccaaagtaatccatgcaatcaacccaagataaacattcaaaggataggttactcctatgataaatttgaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41498495 taagtagggaaggttaaatggtgtctgcaccaaagtaatccatgcaatcaacccaagatgaacattcaaaggataggttactcctatgataaatttgaat 41498396  T
Q  214 agaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaaggtttggttagccggtgaataa- 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41498395 agaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaaggtttggttagccggtgaataaa 41498296  T
Q  313 ---aatgttttaggaagttgttatttattcttttagcttaaagtgtctacttttgatttcttctctctgaaaacattaaaccatcttttaagttatttct 409  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41498295 atgaatgttttaggaagttgttatttattcttttagcttaaagtgtctacttttgatttcttctctctgaaaacatcaaaccatcttttaagttatttct 41498196  T
Q  410 tcttcatcccctgacc 425  Q
    ||||||||||||||||    
T  41498195 tcttcatcccctgacc 41498180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 346
Target Start/End: Complemental strand, 41513682 - 41513530
Alignment:
Q  193 actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg 292  Q
    |||||||| | ||||| ||| |||||||||||||||  |||||||||||||| |||||| |||||||||||||||| ||||||| |||| |||||| |||    
T  41513682 actcctattagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattttgggttgagg 41513583  T
Q  293 tttggttagccggtgaataaaatgttttaggaagttgttatttattcttttagc 346  Q
    |||  |||| |  || ||||||||||||| |||||||||||| |||||||||||    
T  41513582 ttt-attaggccatggataaaatgttttaagaagttgttattgattcttttagc 41513530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 193 - 346
Target Start/End: Complemental strand, 41522648 - 41522496
Alignment:
Q  193 actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg 292  Q
    |||||||| | ||||| ||| |||||||||||||||  |||||||||||||| |||||| ||||| |||||||||| ||||||| |||||||| || |||    
T  41522648 actcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaattatagtgaaaatcttgttggattatggattgagg 41522549  T
Q  293 tttggttagccggtgaataaaatgttttaggaagttgttatttattcttttagc 346  Q
    ||||| ||| |  || |||||||||||||  ||||||||||| |||||||||||    
T  41522548 tttgg-taggccatggataaaatgttttaaaaagttgttattgattcttttagc 41522496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 41517606 - 41517526
Alignment:
Q  49 cagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggttaagtagggaaggtta 129  Q
    |||||||||||||||| ||||||||||||| | || ||| ||||| ||||||||||||||||||||| | |||| ||||||    
T  41517606 cagggtctagtgggagggagttagttatttagcagcgtcgagaaatagtactgaatgagagtggttatgcaggggaggtta 41517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 33080386 - 33080315
Alignment:
Q  217 aaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggtt 288  Q
    |||||||||| |  |||||||||||||| |||||| |||||||||||||||| ||||||| |||||||||||    
T  33080386 aaacaccttcaacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattatgggtt 33080315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 41508013 - 41507949
Alignment:
Q  49 cagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggt 113  Q
    ||||||||| |||| | ||||||||||||| ||||  || |||||||||||||||||||||||||    
T  41508013 cagggtctaatgggtgggagttagttatttagtagcatcgagaaagagtactgaatgagagtggt 41507949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University