View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_high_9 (Length: 419)
Name: NF2734_high_9
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 41497735 - 41498134
Alignment:
| Q |
18 |
gaacttggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgttgttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497735 |
gaacttggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgttgttgt |
41497834 |
T |
|
| Q |
118 |
catcaaagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaagagatatatttaagctacacataacattttccaaacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497835 |
catcaaagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaagagatatatttaagctacacataacattttccaaacat |
41497934 |
T |
|
| Q |
218 |
gataacactcaagcaaaaacttggtaactaaggaatggtatattctttattcaaatgaaaatatagttggttgccgcaacatttcaacgaaaatccagcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41497935 |
gataacactcaagcaaaaacttggtaactaaggaatggtatattctttattcaaatgaaaatatagttggttgccgcaacatttcaacgaaaattcagcc |
41498034 |
T |
|
| Q |
318 |
attggctcgtcaagtaattgactatatatgatttcaccaaattcagaaaaacctgtgatcatgtctacctaagaaaaaccaaaatgagttttcttacctg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41498035 |
attggctcgtcaagtaattgactatatatgatttcaccaaattcagaaaaacctgtgatcatgtttacctaagaaaaaccaaaatgagttttcttacctg |
41498134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 23 - 413
Target Start/End: Original strand, 41506983 - 41507382
Alignment:
| Q |
23 |
tggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgttgttgtcatca |
122 |
Q |
| |
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|||| |||||| |||||||||||| ||| ||| |||||||| ||| |||||||||||||||| ||||||| || || || ||||||| | |||||| |
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| T |
41506983 |
tggacttggatactcattcttcacgacaagtccgtaaatagccttcttttcatgtactccttgagacatacgccaatcttcatcgtcgtcatcatcatca |
41507082 |
T |
|
| Q |
123 |
aagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaagagatatatttaagctacacataacattttccaaacatg--at |
220 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||| |||||||| | |
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| T |
41507083 |
aggtgaatgatctcaatatcctttttcactttcattgttcccatacctagcataaaagagatatgtttaagct--acataaaatttaacaaacatgacac |
41507180 |
T |
|
| Q |
221 |
aacactcaagcaaaaacttggtaactaaggaatggtatattctttattcaaatgaaaatatagttggttg-----ccgcaacatttcaacgaaaatccag |
315 |
Q |
| |
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|| |||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||| | |||| | | |||||||| ||||||||| |
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| T |
41507181 |
aatactcaagcaaaagcttggaaaataaggaatggtagattctttattcaaatgaaaatatagctagttgtctcttctccgcatttcaaggaaaatccaa |
41507280 |
T |
|
| Q |
316 |
ccattggctcgtcaagtaattgactatatatgatttcaccaaattcagaaa----aacctgtgatcatgtctacctaagaaaaaccaaaatgagttttct |
411 |
Q |
| |
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||| ||||| |||| ||||| |||||||||||||||| |||||| | ||| ||| ||||||||||| ||| | | |||||| |||||||||||||| |
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| T |
41507281 |
ccaccggctcttcaactaattaactatatatgatttcatcaaattaaaaaaaaagaacatgtgatcatgtttacttgataaaaactaaaatgagttttct |
41507380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 41501764 - 41502148
Alignment:
| Q |
18 |
gaacttggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgttgttgt |
117 |
Q |
| |
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||||||||| ||||||||||||||||||| ||| |||||| ||||| ||| ||||||||||||||| |||||||||| | ||| | |
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| T |
41501764 |
gaacttggacttggatcctcattcttcacgacaagtccatatatagccttcttttcatgtactccttcagacatacaccaattatcaac----------- |
41501852 |
T |
|
| Q |
118 |
catcaaagtgcatgatctcaatatcctttttcactttcattgttcccttacctagcataaaagagatatatttaagctacacataacattttccaaacat |
217 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||| |||||||| ||||||||| | | || ||| |
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| T |
41501853 |
-atcaaggtgcatgatctcaatatcctttttcactttaattgttcccatgcctagcataaaagatatatgtttaagct--acataacatctactaaccat |
41501949 |
T |
|
| Q |
218 |
gataacactcaagcaaaaacttggtaactaaggaatggtatattctttattcaaatgaaaatatagttggttgccgcaacatttcaacgaaaatccagcc |
317 |
Q |
| |
|
|| || ||||||||| |||||||| || |||||||| ||| ||||||||||||||||||||||||| | | || | || |||||| ||||||||| || |
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| T |
41501950 |
gacaatactcaagcataaacttggaaaataaggaatcgtagattctttattcaaatgaaaatatagctagctgtctcaggttttcaaggaaaatccaacc |
41502049 |
T |
|
| Q |
318 |
attggctcgtcaagtaattgactatatatgatttcaccaaatt-cagaaaaacctgtgatcatgtctacctaagaaaaaccaaaatgagttttcttacct |
416 |
Q |
| |
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| T |
41502050 |
acgggctcttcaactaattgac--tatatgatttcatcagattaaaaaaaaacatgtgatcatgtttgcctaataaaaaccatgatgagttttcttacct |
41502147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 353
Target Start/End: Original strand, 33078222 - 33078402
Alignment:
| Q |
176 |
aaaagagatatatttaagctacacataacat----tttccaaacatgataacactcaagcaaaaacttggtaactaaggaatggtatattctttattcaa |
271 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| | ||||| |||| |||||||||||||| ||| || | |||||| ||| ||||||||||| | |
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| T |
33078222 |
aaaagagatatgtttaagct-cacataacataacatttgcgaacataataatactcaagcaaaaacctggaaaattaggaatagtagattctttattcca |
33078320 |
T |
|
| Q |
272 |
atgaaaatatagttggttgccgcaacatttcaacgaaaatccagccattggctcgtcaagtaattgactatatatgatttca |
353 |
Q |
| |
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||| |||||| | | ||| || ||| |||| || ||||||||||| | |||||| ||||||||||| ||||||||||||||| |
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| T |
33078321 |
atgtaaatattgctagtttcctcaagattttaaggaaaatccagctactggctcttcaagtaattggctatatatgatttca |
33078402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 362
Target Start/End: Original strand, 41467660 - 41467823
Alignment:
| Q |
198 |
acataacattttccaaacatgataacactcaagcaaaaacttggtaactaaggaatggtatattctttattcaaatgaaaatatagttggttgccgcaac |
297 |
Q |
| |
|
||||||||||| | ||||||||||| |||||| || ||||||| || ||||| ||||| |||||||||| |||||||| || | || ||| || | |
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| T |
41467660 |
acataacatttgctaaacatgataagactcaaacagaaacttgaaaaataaggtatggtggattctttatttcaatgaaaacatttctagtagcctcagc |
41467759 |
T |
|
| Q |
298 |
atttcaacgaaaatccagccattggctcgtcaagtaattgactatatatgatttcaccaaattca |
362 |
Q |
| |
|
||||||| |||||||||||| ||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
41467760 |
atttcaaggaaaatccagccgctggaccttcaagtaattgactatatatga-ttcaccaaattca |
41467823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 41522163 - 41522254
Alignment:
| Q |
23 |
tggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgttgt |
114 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||| ||| ||| ||| |||||||||||||| | |||||| ||| |||| |||||||||| |
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| T |
41522163 |
tggacttggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacatagacccaccatcatcgtcgttgt |
41522254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 365
Target Start/End: Original strand, 41518234 - 41518351
Alignment:
| Q |
247 |
aaggaatggtatattctttattcaaatgaaaatatagttggttgccgcaacatttcaacgaaaatccagccattggctcgtcaagtaattgactatatat |
346 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| | | | || ||| || || |||||| |||||||||||| | |||| |||||||||||| || |||| |
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| T |
41518234 |
aaggaatggtagattctttattccaaagaaaaagt-gctagtagcctcagcagttcaacaaaaatccagccactagctcttcaagtaattgaataaatat |
41518332 |
T |
|
| Q |
347 |
gatttcaccaaattcagaa |
365 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
41518333 |
gatttcatcaaattcagaa |
41518351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 41513228 - 41513316
Alignment:
| Q |
23 |
tggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacatacacctttcatcgtcgtcgt |
111 |
Q |
| |
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|||| ||||| ||||||||||| |||||| |||| ||| ||| ||| |||||||||||||| | |||||| ||| |||||||||||| |
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| T |
41513228 |
tggacttggaacctcattcttcgcagcaaatccaaaaaaagctttcttttcatgtactcctcgagacatagacccaacatcgtcgtcgt |
41513316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 41517265 - 41517362
Alignment:
| Q |
222 |
acactcaagcaaaaacttggtaactaaggaatgg-----tatattctttattcaaatgaaaatatagttggttgccgcaacatttcaacgaaaatcca |
314 |
Q |
| |
|
||||||||||| |||||||| || ||| |||||| || ||||||||||||||||||||||||| | | || | || |||||||| ||||||||| |
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|
| T |
41517265 |
acactcaagcataaacttggaaaataaagaatggtagattagattctttattcaaatgaaaatatagctagctgtctcagcatttcaaggaaaatcca |
41517362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 41508187 - 41508231
Alignment:
| Q |
321 |
ggctcgtcaagtaattgactatatatgatttcaccaaattcagaa |
365 |
Q |
| |
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||||| |||||||||||| || ||||||||||| ||||||||||| |
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| T |
41508187 |
ggctcttcaagtaattgaataaatatgatttcatcaaattcagaa |
41508231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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