View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_low_1 (Length: 872)
Name: NF2734_low_1
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Original strand, 30697460 - 30697934
Alignment:
| Q |
17 |
attgtttacttcaagagtttattatcattgttagcaagtaagctaaggatagaattaacgatagaattagacaatgagagggagcaaaaggaatcaaggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30697460 |
attgtttacttcaagagtttattatcattgttagcaagtaagctaaggatagaattaacgatagaattagacaatgagagggagcaaaaggaatcaaggg |
30697559 |
T |
|
| Q |
117 |
agatagatctctatacataattagttttacaattttgaaactataataaatcctaatacaaatggtagaaatttaagagatgcatttcatgatatgaggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30697560 |
agatagatctctatacataattagttttacaattttgaaactataataaatcctaatacaaatggtagaaatttaagagatgcatttcatgatatgaggt |
30697659 |
T |
|
| Q |
217 |
tgataatacatagtatatcacattcatgaatagatatgatcttctttcctataaattggaggtcttgtaaagtgttgtagcatctcaaaccatatagcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30697660 |
tgataatacatagtatatcacattcatgaatagatatgatcttctttcctataaattggaggtcttgtaaagtgttgtagcatctcaaaccatatagcaa |
30697759 |
T |
|
| Q |
317 |
gagaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgcaaatgatagtgtttaatttatcatttcttgtaactct----taagtgagagtactt |
412 |
Q |
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| T |
30697760 |
gagaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgcaaatgatagtgtttaatttatcatttcttgtaactcttaagtaagtgagagtactt |
30697859 |
T |
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| Q |
413 |
aaatttgtagagcgatacgcaattcagtttagttgctcaagatatacaagaagtgtctatccacataaatttttg |
487 |
Q |
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| T |
30697860 |
aaatttgtagagcgatacgcaattcagtttagttgctcaagatatacaagaagtgtctaaccacataaatttttg |
30697934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 490 - 765
Target Start/End: Original strand, 30697989 - 30698265
Alignment:
| Q |
490 |
atctgcagattttccctaacaaaatggaagatcaaagtagtgagtttatcaccattttaagggtatgtgttggcacattttatgtcctaaatgtgatgtc |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30697989 |
atctgcagattttccctaacaaaatggaagatcaaagtagtgattttatcaccattgtaagggtatgtgttggcacattttatgtcctaaatgtgatgtc |
30698088 |
T |
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| Q |
590 |
tttgtctaaatactgtctatttgcattaaggtacttgtcatgttc-ttttttgttcaatggatactactactagtactcactctttgagctcaaattacg |
688 |
Q |
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| T |
30698089 |
tttgtctaaatactgtctatttgcattaaggtacttgtcatgttctttttttgttcaatggatactactactagtactcactctttgagctcaaattacg |
30698188 |
T |
|
| Q |
689 |
aataaaattttgtttcatgtgaaaataaaaagaaagatcacaaaacctaaacacgctaagcagattaagcgatgatg |
765 |
Q |
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| T |
30698189 |
aataaaattttgtttcatgtgaaaataaaaagaaagatcgcaaaacctaaacacgctaagcggattaagcgatgatg |
30698265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 30688104 - 30688392
Alignment:
| Q |
18 |
ttgtttacttcaagagtttattatc--attgttagcaagtaagctaaggatagaattaacgatagaattagacaatgagagggagc--aaaaggaatcaa |
113 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||| |||||||| |||||||||| ||||| |||||| | |||||||||||| ||| |||||||| |
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| T |
30688104 |
ttgtttacttcaagagtttattatctcatttttagcaggtaagctagggatagaattgacgatgcaattaggcgatgagagggagctcaaagggaatcaa |
30688203 |
T |
|
| Q |
114 |
gggagatagatctctatac---ata-attagttttacaattttgaaactataataaatcctaatacaaatggtagaaatttaagagatgcatttcatgat |
209 |
Q |
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|||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
30688204 |
gggagatagatctctatagtctatacataagttttataattttgaaactataataaatcctaatacaaatggtagaaatttgagagatgcatttcataat |
30688303 |
T |
|
| Q |
210 |
atgaggttgataatacatagtatatcacattcatgaatagatatgatcttctttcctat-aaattggaggtcttgtaaagtgttgtagcatc |
300 |
Q |
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|||||||| ||||||||| ||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30688304 |
atgaggttaataatacatggtatatcacattcatgattagaaatga---tctttcctataaaattggaggtcttgtaaagtgttgtagcatc |
30688392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 291 - 485
Target Start/End: Original strand, 30688532 - 30688721
Alignment:
| Q |
291 |
ttgtagcatctcaaaccatatagcaagagaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgcaaatgatagtgtttaatttatcatttcttg |
390 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
30688532 |
ttgtaacatctcaatccatatagcaagagaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgtaa-tgatagtgttt----tatcatttcttg |
30688626 |
T |
|
| Q |
391 |
taactcttaagtgagagtacttaaatttgtagagcgatacgcaattcagtttagttgctcaagatatacaagaagtgtctatccacataaatttt |
485 |
Q |
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| T |
30688627 |
taactcttaagtgagagtactaaaatttgtagagtgatacgcaattcaggttagttgctcaagatatgcaagaagtgtctaagcacataaatttt |
30688721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 545 - 667
Target Start/End: Original strand, 30689153 - 30689274
Alignment:
| Q |
545 |
tttaagggtatgtgttggcacattttatgtcctaaatgtgatgtctttgtctaaatactgtctatttgcattaaggtacttgtcatgttcttttttgttc |
644 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||| |
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| T |
30689153 |
tttaagggtatgtgttggcacattgtatgtcctaaatgt-atgtctttgtcttaatactgtctatttgcattaaggtacttgtcatgtttttatatgttc |
30689251 |
T |
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| Q |
645 |
aatggatactactactagtactc |
667 |
Q |
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|||| ||||||||||| |||||| |
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| T |
30689252 |
aatgaatactactactcgtactc |
30689274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 794 - 860
Target Start/End: Original strand, 30698294 - 30698360
Alignment:
| Q |
794 |
ttactgaaattaacaacttgatgatttgaacttgctgtttctgcttgaactttgattatcagatatt |
860 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30698294 |
ttactgaaattaacaacctgatgatttgaacttgctgttgctgcttgaactttgattatcagatatt |
30698360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 30688768 - 30688833
Alignment:
| Q |
484 |
tttggtatctgcagattttccctaacaaaatggaagatcaaagtagtgagtttatcaccattttaa |
549 |
Q |
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| T |
30688768 |
tttggtatctgcagattttccccaacaaaatggaagatcaaagtagtgagtttaacaccattttaa |
30688833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 794 - 859
Target Start/End: Original strand, 30689411 - 30689476
Alignment:
| Q |
794 |
ttactgaaattaacaacttgatgatttgaacttgctgtttctgcttgaactttgattatcagatat |
859 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
30689411 |
ttactgaaattaacaacttgatgatttgaactagctgttgctgcttgtactttgattatcagatat |
30689476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 553 - 601
Target Start/End: Original strand, 30718563 - 30718611
Alignment:
| Q |
553 |
tatgtgttggcacattttatgtcctaaatgtgatgtctttgtctaaata |
601 |
Q |
| |
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||||| |||||||||| |||||||||||||| |||||||||||| |||| |
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| T |
30718563 |
tatgtattggcacattgtatgtcctaaatgttatgtctttgtcttaata |
30718611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 610
Target Start/End: Original strand, 30671281 - 30671332
Alignment:
| Q |
559 |
ttggcacattttatgtcctaaatgtgatgtctttgtctaaatactgtctatt |
610 |
Q |
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|||||||||| |||||||||||| |||||||||||| ||||||||||||| |
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| T |
30671281 |
ttggcacattgaatgtcctaaatgctatgtctttgtcttaatactgtctatt |
30671332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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