View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_low_11 (Length: 409)
Name: NF2734_low_11
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 42317094 - 42316696
Alignment:
| Q |
18 |
aagttattattaatatgacccacttagaaattttttaagtattactaaattagggtgaatgcatcgtttcttatcagatattacctttaaaaattgattg |
117 |
Q |
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| T |
42317094 |
aagttattattaatatgacccacttagaaattttttaagtattactaaattagagtgaatgcatcgtttcttattagatattacctttgaaaattgattg |
42316995 |
T |
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| Q |
118 |
aataaataatatgaaagcgtgagagcctctttnnnnnnnnn-tgaacgcgtgagagccaatttaactacatcttaataagagaacgaatagtttagactc |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42316994 |
aataaataatatgaaagcgtgagagcctctttaaaaaaaaaatgaacgcgtgagagccaatttaactatatcttaataagagaacgaatagtttagactc |
42316895 |
T |
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| Q |
217 |
catccattcacgtttgattcatgaaactttaattcacaattttatccaatatcttaatctttaagattttaagtgagatcggagggtcgatttatcatca |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
42316894 |
cacccattcacgtttgattcatgaaactttaattcacaattttatacaatatcttaatttttaagattttaagtgagataggagggtcgatttatcatca |
42316795 |
T |
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| Q |
317 |
ctagacacattggtacacgtttctcgcataatgacctttg------gatattcaagagagattttactgtgtctatgcatgtatcaaaaatcagatttt |
409 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42316794 |
ctagacacattggtacacgtttctcccataatgacctttggaataagatattcaagagagattttactgtgtctatgcatgtatcaaaaatcagatttt |
42316696 |
T |
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