View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_low_14 (Length: 382)
Name: NF2734_low_14
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 184 - 368
Target Start/End: Complemental strand, 25992303 - 25992120
Alignment:
| Q |
184 |
gtaagaaatgtgagtttcttctttcataattacctcgacacttatgatgatatcataagagtaaaaacaaagttaaattttctaggtagaatttgttttt |
283 |
Q |
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| T |
25992303 |
gtaagaaatgtgatttacttttttcataattacctctacaat-attatgatatcataagagtaaaaacaaagttaaattttctaggtagaatttgttttt |
25992205 |
T |
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| Q |
284 |
taggtagaatcaattcaaataacttatgaatttgttgttgtacacatcacacatgaactaaagatcatctgataagagtataatc |
368 |
Q |
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| T |
25992204 |
taggtagaatcaattcaaataacttttgaatttgttgttgtacacatcacacatgaactaaagatcatctaataagagtataatc |
25992120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 25992482 - 25992368
Alignment:
| Q |
4 |
caaccacattcattgaagcactaaatttcttttgtgtttctcatgttgtcttggccaaacata-tacactttccgtcttcaacgtgcctacagagtacat |
102 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25992482 |
caaccatattcattgaagcactaaatttcttttgtgtttctcatgttctcttgcccaaacatggtacactttccgtcttcaacgtgcctacagagtacat |
25992383 |
T |
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| Q |
103 |
taatttcattagttc |
117 |
Q |
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| T |
25992382 |
taatttcattagttc |
25992368 |
T |
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