View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_low_17 (Length: 341)
Name: NF2734_low_17
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_low_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 17468450 - 17468119
Alignment:
| Q |
11 |
cacagaacaatttaccgaactaataagaaatctaacttatcannnnnnncc-cacgtaagtccaatagaatattaaggtgcataaaatcatacctgagtg |
109 |
Q |
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| T |
17468450 |
cacacaacaatttaccgaactaataagaaatctaacttatcattttttttttcacgtaagtccaatagaatattaaggtgcatacaatcatacctgagtg |
17468351 |
T |
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| Q |
110 |
aaatgaggttggctgaagtgaacaggcttttcgggagattgaagtcggaaccatcaaagtcagccataagagtaaggttaagttcttcaagatggggacc |
209 |
Q |
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| T |
17468350 |
aaatgaggttggctgaagtgaacaggcttttcgggagattgaagtcggaaccatcaaagtcagccataagagtaaggttaagttcttgaagatggggacc |
17468251 |
T |
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| Q |
210 |
aatggcagcacgaacccaattatcaacagaatattcacgaaactgataatcatcacgagtggagtgagcacaatcaagagtcatcttccgaatggtgcaa |
309 |
Q |
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| T |
17468250 |
aatggcagcacgaacccaattatcaacagaatattcacgaaactgataatcatcacgagtggagtgagcacaatcaagagtcatcttccgaatggtgcaa |
17468151 |
T |
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| Q |
310 |
gggttacggagaagaacgaggaagacgctgtt |
341 |
Q |
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| T |
17468150 |
gggttacggagaagaacgaggaagacgctgtt |
17468119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 17468633 - 17468572
Alignment:
| Q |
95 |
aatcatacctgagtgaaatgaggttggctgaagtgaacaggcttttcgggagattgaagtcg |
156 |
Q |
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| T |
17468633 |
aatcatacctgagtgaaacgaggttggcggaagtgaatagcgttttcgggagcttgaagtcg |
17468572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 8339344 - 8339293
Alignment:
| Q |
202 |
tggggaccaatggcagcacgaacccaattatcaacagaatattcacgaaact |
253 |
Q |
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| T |
8339344 |
tggggtccaatggcagcacgaacccaagtctctacggaatattcacgaaact |
8339293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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