View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2734_low_18 (Length: 335)

Name: NF2734_low_18
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2734_low_18
NF2734_low_18
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-335)||(86855-87188)
[»] chr8 (6 HSPs)
chr8 (1-332)||(17277753-17278083)
chr8 (1-87)||(8366383-8366469)
chr8 (256-335)||(8366658-8366735)
chr8 (171-246)||(17857623-17857696)
chr8 (170-246)||(6777799-6777876)
chr8 (256-309)||(23015853-23015904)
[»] chr7 (7 HSPs)
chr7 (3-335)||(41000154-41000484)
chr7 (3-141)||(40998486-40998625)
chr7 (1-87)||(7842952-7843038)
chr7 (1-87)||(9595758-9595844)
chr7 (1-87)||(9646721-9646807)
chr7 (1-87)||(9647257-9647343)
chr7 (265-335)||(7843244-7843316)
[»] chr2 (8 HSPs)
chr2 (23-309)||(24806384-24806669)
chr2 (23-309)||(24808241-24808525)
chr2 (1-309)||(18535406-18535710)
chr2 (1-87)||(22300218-22300304)
chr2 (256-331)||(17330563-17330638)
chr2 (256-335)||(22299953-22300030)
chr2 (167-309)||(44792928-44793065)
chr2 (259-331)||(45709247-45709322)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-309)||(55133-55442)
[»] scaffold0146 (1 HSPs)
scaffold0146 (55-335)||(27482-27760)
[»] chr1 (10 HSPs)
chr1 (39-335)||(31390245-31390543)
chr1 (1-155)||(20759372-20759527)
chr1 (1-87)||(20189119-20189205)
chr1 (1-87)||(20190752-20190838)
chr1 (1-87)||(36233581-36233667)
chr1 (256-330)||(18801388-18801462)
chr1 (1-87)||(24157376-24157461)
chr1 (167-309)||(40554327-40554465)
chr1 (288-335)||(6473438-6473485)
chr1 (267-331)||(24326137-24326201)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-309)||(241322-241631)
[»] scaffold0018 (1 HSPs)
scaffold0018 (23-309)||(185-469)
[»] chr4 (11 HSPs)
chr4 (1-335)||(9398693-9399027)
chr4 (167-335)||(42872525-42872688)
chr4 (167-335)||(18280812-18280975)
chr4 (167-335)||(21377675-21377840)
chr4 (1-87)||(9166929-9167015)
chr4 (1-87)||(15017965-15018051)
chr4 (1-87)||(15019605-15019691)
chr4 (167-309)||(11098925-11099062)
chr4 (1-87)||(39488472-39488558)
chr4 (1-87)||(13518282-13518368)
chr4 (257-331)||(54800092-54800166)
[»] chr3 (8 HSPs)
chr3 (1-244)||(5553955-5554199)
chr3 (1-309)||(16346910-16347215)
chr3 (1-309)||(47418080-47418384)
chr3 (1-242)||(23460478-23460720)
chr3 (1-124)||(47566751-47566875)
chr3 (1-87)||(25531912-25531998)
chr3 (256-335)||(2309356-2309433)
chr3 (256-335)||(16022499-16022576)
[»] scaffold0180 (1 HSPs)
scaffold0180 (167-309)||(10894-11033)
[»] scaffold0269 (2 HSPs)
scaffold0269 (1-87)||(1725-1811)
scaffold0269 (272-335)||(1465-1526)
[»] chr5 (5 HSPs)
chr5 (1-87)||(244763-244849)
chr5 (1-87)||(29949860-29949946)
chr5 (1-87)||(29951498-29951584)
chr5 (256-335)||(38936979-38937056)
chr5 (119-246)||(16781021-16781148)
[»] scaffold0083 (1 HSPs)
scaffold0083 (256-335)||(35105-35182)
[»] scaffold0094 (1 HSPs)
scaffold0094 (167-246)||(13049-13128)
[»] scaffold0139 (2 HSPs)
scaffold0139 (169-309)||(6347-6482)
scaffold0139 (169-245)||(4681-4755)
[»] scaffold0002 (1 HSPs)
scaffold0002 (167-309)||(374834-374973)
[»] scaffold0321 (1 HSPs)
scaffold0321 (167-246)||(5676-5753)


Alignment Details
Target: scaffold0026 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 86855 - 87188
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccacaacttcaaagatc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  86855 tgtggaattgtaacgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccacaacttcgaagatc 86954  T
Q  101 caatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcct 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86955 caattaaattgtaacctctcttgtaataactagccacctaggagttataacactaattatactatgattgtaagctttttagcatcctagcctatttcct 87054  T
Q  201 atataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||| ||||||||    
T  87055 atataaagggggcgaaaataatgaagaggacaagtagaattttgat-aaaaaaaatacactttgtgtgttgtgagagctttgtctctttttcggttctgg 87153  T
Q  301 attgaaccaagtttatcgaatcttatcaatggctt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  87154 attgaaccaagtttatcgaatcttatcaatggctt 87188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 17278083 - 17277753
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  17278083 tgtggaattgtaacgtctagacataataagccttcacaaatcaatgtgaaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagat 17277984  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||||| | ||  |||||||    
T  17277983 ccaattaaattgtaacctcttttgtaataactagccaccaaggagttataacacaaattatgctatgattgtaagctttttagcattcaagtttatttcc 17277884  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctg 299  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||         ||||||||||||||||||| ||||||| ||  |||||||||||     
T  17277883 tatataaagggggcggaaataatgaaggggacaagttgaattttgataaaaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttcta 17277786  T
Q  300 gattgaaccaagtttatcgaatcttatcaatgg 332  Q
    |||||||||||||||||||||||||||||||||    
T  17277785 gattgaaccaagtttatcgaatcttatcaatgg 17277753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8366383 - 8366469
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  8366383 tgtggaattgtaacgtctagaaataataagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 8366469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 8366658 - 8366735
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8366658 tacactttgtgtgttgtga-agctttgcttctttt-tggttctggattgaaccaagtttatcgaatcttatcaatggctt 8366735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 17857623 - 17857696
Alignment:
Q  171 taagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgat 246  Q
    ||||||||| ||||| |||||||||| |||||||||||||||| ||||||||||| |  ||| |||||||||||||    
T  17857623 taagcttttcagcattctagcctattacctatataaagggggcaaaaataatgaata--acaggtagaattttgat 17857696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 6777876 - 6777799
Alignment:
Q  170 gtaagctttttagcatccta-gcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgat 246  Q
    |||||||||| ||||| ||| ||||||||  |||||||||||||||||||||||||| | || | |||||||||||||    
T  6777876 gtaagcttttcagcattctaagcctattttttatataaagggggcgaaaataatgaataagatatgtagaattttgat 6777799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 23015904 - 23015853
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    ||||||||||||||||||| |||||||  ||||||| |||||||||||||||||    
T  23015904 tacactttgtgtgttgtga-agctttgcttcttttt-ggttctggattgaacca 23015853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 335
Target Start/End: Complemental strand, 41000484 - 41000154
Alignment:
Q  3 tggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagatcc 101  Q
    ||||||||||| |||||   ||||||| |||||||||||||||||| |||| ||||||||||||  |||| ||||||| |||||| ||||| ||||||||    
T  41000484 tggaattgtaacgtctagccataataatccttcacaaatcaatgtgcaaatgaatatgtaaccttttcatgcattgatcagccaccaactttaaagatcc 41000385  T
Q  102 aatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttccta 201  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||| |||||||||||||    
T  41000384 aattaaattgtaacctcttttgtaataactagccacctaggagttataacactaattatgttatgattgtaagcatttcagcatccaagcctatttccta 41000285  T
Q  202 tataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctgga 301  Q
    ||||||||||||||||||||||||| |||||||||||||||| |          ||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  41000284 tataaagggggcgaaaataatgaag-ggacaagtagaatttttaaaaaaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttctgga 41000188  T
Q  302 ttgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||||||||||||||||||    
T  41000187 ttgaaccaagtttatcgaatcttatcaatggctt 41000154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 40998625 - 40998486
Alignment:
Q  3 tggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagatcc 101  Q
    ||||||||||| |||||   ||||||| |||||||||||||||||| |||| ||||||||||||  |||| ||||||| |||||| ||||| ||||||||    
T  40998625 tggaattgtaacgtctagccataataatccttcacaaatcaatgtgcaaatgaatatgtaaccttttcatgcattgatcagccaccaactttaaagatcc 40998526  T
Q  102 aatttaattgtaacctctcttgtaataactagccacctag 141  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  40998525 aattaaattgtaacctcttttgtaataactagccacctag 40998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7842952 - 7843038
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||    
T  7842952 tgtggaattgtaacgtctagaaataataagccttcacaaatcaatgtgcaaatgaatatgtaacctcttcatgcattgattagccac 7843038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9595844 - 9595758
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||    
T  9595844 tgtggaattgtaacgtctagaaataataagccttcacaaatcaatgtgcaaatgaatatgtaaccacctcatgcattgattagccac 9595758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9646807 - 9646721
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||  |||| ||||||||||| |||||| ||||||||||||||    
T  9646807 tgtggaattgtaacgtctagaaataataagccttcacaaatcaatgtccaaatgaatatgtaaccacctcatgcattgattagccac 9646721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9647343 - 9647257
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||| ||||||||||||| |||| |||||||||||||||||| |||| |||||||||    
T  9647343 tgtggaattgtaacgtctagaaataatcagcctttacaaatcaatgtgcaaatgaatatgtaacctcctcatgcatttattagccac 9647257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 7843244 - 7843316
Alignment:
Q  265 tgtgttgtgagagctttgactcttttttg--gttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    |||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  7843244 tgtgttgtgagagctttgtctctttttttttgttctggattgaaccaagtttatcgaatcttatcaatggctt 7843316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 24806669 - 24806384
Alignment:
Q  23 ataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagatccaatttaattgtaacctctct 121  Q
    |||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| |||||||||||| ||||||||||||| |    
T  24806669 ataataagccttcaaaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagatccaattaaattgtaacctcttt 24806570  T
Q  122 tgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataa 221  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  24806569 tgtaataactagccacctaggagttataacactaattatgctatgattgtaagcttttcagcatccaagcctattttctatataaagggggcgaaaataa 24806470  T
Q  222 tgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    ||||| |||||||||||||||||||         ||||||||||||||||||| |||||||  |||||||| ||||||||||||||||    
T  24806469 tgaaggggacaagtagaattttgataaaaaaaaatacactttgtgtgttgtga-agctttgcttctttttt-gttctggattgaacca 24806384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 24808525 - 24808241
Alignment:
Q  23 ataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagatccaatttaattgtaacctctct 121  Q
    |||||||||||||| ||||||||||| |||| |||||||||||| ||||| |||||||  ||||| ||||| |||||||||||| ||||||||||||| |    
T  24808525 ataataagccttcaaaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatccgccaccaactttaaagatccaattaaattgtaacctcttt 24808426  T
Q  122 tgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataa 221  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  24808425 tgtaataactagccacctaggagttataacactaattatgctatgattgtaagcttttcagcatccaagccgatttcctatataaagggggcgaaaataa 24808326  T
Q  222 tgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    ||||| |||||||||||||||||||         ||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||    
T  24808325 tgaaggggacaagtagaattttgat-aaaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttctggattgaacca 24808241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 18535710 - 18535406
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||| ||||| |||||   ||||||||| |||||||||||||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  18535710 tgtggaaatgtaacgtctagccataataagcattcacaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagat 18535611  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||| |||||||||||    
T  18535610 ccaattaaattgtaaccttttttgtaataactagccacctaggagttataacactaattatgttatgattgtaagcatttcagcatccaagcctatttcc 18535511  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctg 299  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||         ||||||||||||||||||| ||||||| ||  ||||||||||||    
T  18535510 tatataaagggggcgaaaataatgaag-ggacatgtagaattttgat--aaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttctg 18535416  T
Q  300 gattgaacca 309  Q
    ||||||||||    
T  18535415 gattgaacca 18535406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 22300304 - 22300218
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  22300304 tgtggaattgtaacgtctagaaataataagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 22300218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 17330563 - 17330638
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatg 331  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  17330563 tacaatttgtgtgttgtgagagctttgtctcctttttggttctggattgaaccaagtttatcgaatcttattaatg 17330638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 22300030 - 22299953
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||| |||||||  || |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  22300030 tacactttgtgtgttgtga-agctttgcttcctttt-ggttttggattgaaccaagtttatcgaatcttatcaatggctt 22299953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 309
Target Start/End: Complemental strand, 44793065 - 44792928
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtg 266  Q
    ||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| |  | | |||||||||||||         |||||||||||    
T  44793065 attgtaagcttttcagcattctagcctattacctatttaaagggggcgaaaataatgaata--aaaggtagaattttgat-aaaaaaaatacactttgtg 44792969  T
Q  267 tgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    |||||||| ||||||| ||  ||| ||||||||||||||||||    
T  44792968 tgttgtga-agctttg-cttctttgtggttctggattgaacca 44792928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 45709247 - 45709322
Alignment:
Q  259 actttgtgtgttgtgagagctttgactcttttttg---gttctggattgaaccaagtttatcgaatcttatcaatg 331  Q
    |||||||||||| |||||| |||| |||||||||    ||||| ||||||||||| ||||||||||||||||||||    
T  45709247 actttgtgtgttatgagagttttgtctcttttttttatgttctagattgaaccaaatttatcgaatcttatcaatg 45709322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 55133 - 55442
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||||||||| |||||   |||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  55133 tgtggaattgtaacgtctagccataataagccttcacaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagat 55232  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  55233 ccaattaaattgtaacctcttttgtaataactaaccacctaggagttataacactaattatgctatgattgtaagcttttcagcatccaagcctatttcc 55332  T
Q  200 tatataaagggggcgaaaa-taatgaagaggacaagtagaattttgat-nnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttc 297  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||          ||||||||||||||||||| ||||||| ||  ||||||||||    
T  55333 tatataaagggggcgaaaattaatgaagagcacaagtagaattttgataaaaaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttc 55430  T
Q  298 tggattgaacca 309  Q
    ||||||||||||    
T  55431 tggattgaacca 55442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 55 - 335
Target Start/End: Original strand, 27482 - 27760
Alignment:
Q  55 aatatgtaacctcctcatccattgattagccac-aacttcaaagatccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacac 153  Q
    |||||||||||| ||||| ||||||| |||||| ||||| |||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||||    
T  27482 aatatgtaaccttctcatgcattgatcagccaccaactttaaagatccaattaaactgtaacctcttttgtaataactagccacctaggagttataacac 27581  T
Q  154 taattatactatgattgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnn 253  Q
    |||||||  ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||           
T  27582 taattatgttatgattgtaagcatttcagcatccaagcctatttcctatataaagggggcgaaaataatgaag-ggacaagtagaattttgataaaaaaa 27680  T
Q  254 nntacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
      ||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27681 aatacactttgtgtgttgtga-agctttg-cttctttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 27760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 39 - 335
Target Start/End: Original strand, 31390245 - 31390543
Alignment:
Q  39 aatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagatccaatttaattgtaacctctcttgtaataactagccac 137  Q
    |||||||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  31390245 aatcaatgtgcaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagatccaattaaattgtaacctcttttgtaataactagccac 31390344  T
Q  138 ctaggaggtataacactaattatactatgattgtaagcttttt-agcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagta 236  Q
    |||| || ||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  31390345 ctagaagttataacactaattatgctatgattgtaaactttttcagcatccgagcctatttcctatataaagggggcgaaaataatgaaggggacaagta 31390444  T
Q  237 gaattttgat--nnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggct 334  Q
    ||||||||||            |||||||||||||||||| ||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  31390445 gaattttgattaaaaaaaaataacactttgtgtgttgtga-agctttg-cttctttttggttctggattgaaccaagtttatcgaatcttatcaatggct 31390542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 20759372 - 20759527
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    |||||||||||||  ||||||||||| ||||||| |  |||||||||| |||| |||||||||| ||||||| ||||||| ||| || ||||||||||||    
T  20759372 tgtggaattgtaacatctataaataacaagccttgattaatcaatgtgcaaatgaatatgtaacatcctcatgcattgatcagcgaccaacttcaaagat 20759471  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacacta 155  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  20759472 ccaattaaattgtaacctctcttctaataactagcaacctaggagttataacacta 20759527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20189205 - 20189119
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||    
T  20189205 tgtggaattgtaacgtctagaaataataagccttcacaaatcaatgtgcaaatgaatatataacctcctcatgcattgattagccac 20189119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20190838 - 20190752
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  20190838 tgtggaattgtaacgtcttgaaataataagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 20190752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 36233581 - 36233667
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  36233581 tgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 36233667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 18801462 - 18801388
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaat 330  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  18801462 tacactttatgtgttgtgagagctttgtctcttttttggttttggattgaaccatgtttatcgaatcttatcaat 18801388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24157461 - 24157376
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||    
T  24157461 tgtggaattgtaacgtctagaaataataagccttcacaaatcaat-tgcaaatgaatatgtaacctcctcatgcattgattagccac 24157376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 40554327 - 40554465
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtg 266  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |||  | |||||||||||||         |||||||||||    
T  40554327 attgtaagcttttcagcattctagcctattacctatataaagggggcgaaaataatgaatagg--aggtagaattttgataaaaaaaaatacactttgtg 40554424  T
Q  267 tgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    |||||||| ||||||| ||  ||| ||||||||||||||||||    
T  40554425 tgttgtga-agctttg-cttctttgtggttctggattgaacca 40554465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 6473438 - 6473485
Alignment:
Q  288 tttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473438 tttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 6473485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 24326201 - 24326137
Alignment:
Q  267 tgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatg 331  Q
    |||||| ||||||||| |||||| |||||| |||||||||||||||||||||||| |||||||||    
T  24326201 tgttgtaagagctttgtctctttcttggttttggattgaaccaagtttatcgaattttatcaatg 24326137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 241322 - 241631
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||||||||| ||||| | |||||||||||||| ||||||||||| |||| ||||| |||||| ||||| ||||||| |||||| ||||| ||||||    
T  241322 tgtggaattgtaacgtctagacataataagccttcaaaaatcaatgtgcaaatgaatatataaccttctcatgcattgatcagccaccaactttaaagat 241421  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  241422 ccaattaaattgtaacctcttttgtaataactagccacctaggagttataacactaattatgctatgattgtaagcttttcagcatccaagcctatttcc 241521  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattttgat--nnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttc 297  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||||           ||||||||||||||||||| ||||||| ||  ||||||||||    
T  241522 tatatatagggggcgaaaataatgaaggagacaagtagaattttgataaaaaaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttc 241619  T
Q  298 tggattgaacca 309  Q
    ||||||||||||    
T  241620 tggattgaacca 241631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 469 - 185
Alignment:
Q  23 ataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagatccaatttaattgtaacctctct 121  Q
    |||||||||||||| ||||||||||| |||| |||||||||||| ||||| |||||||  ||||| ||||| |||||||||||| ||||||||||||| |    
T  469 ataataagccttcaaaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatccgccaccaactttaaagatccaattaaattgtaacctcttt 370  T
Q  122 tgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataa 221  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  369 tgtaataactagccacctaggagttataacactaattatgctatgattgtaagcttttcagcatccaagccgatttcctatataaagggggcgaaaataa 270  T
Q  222 tgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    ||||| |||||||||||||||||||         ||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||    
T  269 tgaaggggacaagtagaattttgat-aaaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttctggattgaacca 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 9399027 - 9398693
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||||||||| ||||| | ||||||||||||||||||| |||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  9399027 tgtggaattgtaacgtctagacataataagccttcacaaataaatgtgcaaatgaatatgtaaccttctcatgcattgatcagccactaactttaaagat 9398928  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |||| ||||||| ||  |||| ||    
T  9398927 ccaattaaattgtaacctcttttgtaataactagccacctaggagttatagcactaattatgctatgattgtaagtttttcagcatccaagtttattccc 9398828  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattttgat--nnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttc 297  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||           ||||||||||||||||||| ||||||| ||  ||||||||||    
T  9398827 tatatagagggggcgaaaataatgaag-ggataagtagaattttgataaaaaaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttc 9398731  T
Q  298 tggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  9398730 tggattgaaccaagtttatagaaacttatcaatggctt 9398693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 335
Target Start/End: Complemental strand, 42872688 - 42872525
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtg 266  Q
    |||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||| |  ||| |||||||||||||         |||||||||||    
T  42872688 attgtaagtttttcagcattctagcctattacctatataaagggggcgaaaataatgaata--acaggtagaattttgataaaaaaaa-tacactttgtg 42872592  T
Q  267 tgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    |||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42872591 tgttgtga-agctttgcttcttttt-ggttctggattgaaccaagtttatcgaatcttatcaatggctt 42872525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 167 - 335
Target Start/End: Complemental strand, 18280975 - 18280812
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtg 266  Q
    |||||| |||||| ||||| ||| |||||| |||||||||||||||||||||||| ||| |  |||||||||||||||||         |||||||||||    
T  18280975 attgtatgcttttcagcattctatcctattacctatataaagggggcgaaaataaggaata--acaagtagaattttgataaaaaaaa-tacactttgtg 18280879  T
Q  267 tgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    |||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18280878 tgttgtga-agctttgcttcttttt-ggttctggattgaaccaagtttatcgaatcttatcaatggctt 18280812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 167 - 335
Target Start/End: Original strand, 21377675 - 21377840
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtg 266  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| | || | ||| |||||| ||         |||| ||| ||    
T  21377675 attgtaagctttttagcattctagcatattacctatataaagggggcgaaaataatgaataagatatgtataatttttataaaaat---tacattttatg 21377771  T
Q  267 tgttgtgagagctttgactctttttt-ggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  21377772 tgttgtgagagctttgtctctttttttggttctggattga-ccaagtttatcgaatcttatcaatggctt 21377840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9166929 - 9167015
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  9166929 tgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 9167015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15018051 - 15017965
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  15018051 tgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 15017965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15019691 - 15019605
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  15019691 tgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 15019605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 11098925 - 11099062
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtg 266  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |  |||||||||||||||||         |||||||||||    
T  11098925 attgtaagcttttcagcattctagcctattacctatataaagggggcgaaaataatgaata--acaagtagaattttgat-aaaaaaaatacactttgtg 11099021  T
Q  267 tgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    |||||||| ||||||| ||  ||||||||||||||||||||||    
T  11099022 tgttgtga-agctttg-cttctttttggttctggattgaacca 11099062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39488558 - 39488472
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  39488558 tgtgaaattgtaacgtctagaaataataagtcttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 39488472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 13518368 - 13518282
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||| ||||||||||||| |||| |||||||||||||||||| |||| |||||||||    
T  13518368 tgtggaattgtaacgtctagaaataattagcctttacaaatcaatgtgcaaatgaatatgtaacctcctcatgcatttattagccac 13518282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 54800166 - 54800092
Alignment:
Q  257 acactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatg 331  Q
    ||||||| ||| |||||||||||||| |||||||||||||||| | |||||||| ||||||||||||||||||||    
T  54800166 acactttatgtattgtgagagctttgtctcttttttggttctgaaatgaaccaaatttatcgaatcttatcaatg 54800092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 5554199 - 5553955
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||||||||| |||||   |||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  5554199 tgtggaattgtaacgtctagccataataagccttcacaaatcaatgtgtaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagat 5554100  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  5554099 ccaattaaattgtaacctcttttgtaataactagcaacctaggagttataacactaattatgctatgattgtaagcttttcagcatccaagcctatttcc 5554000  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattttg 244  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||    
T  5553999 tatataaagggggcgaaaataatgaaggggagatgtagaattttg 5553955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 16346910 - 16347215
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||| ||||| |||||   ||||||||| |||||||||||||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  16346910 tgtggaaatgtaacgtctagccataataagcattcacaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagat 16347009  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||| |||||||||||    
T  16347010 ccaattaaattgtaacctcttttgtaataactagccacctaggagttataacactaattatgttatgattgtaagcatttcagcatccaagcctatttcc 16347109  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctg 299  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||         ||||||||||||||||||| | ||||| ||  ||||||||||||    
T  16347110 tatataaagggggcgaaaataatgaag-ggacaagtagaattttgat-aaaaaaaatacactttgtgtgttgtga-aactttg-cttctttttggttctg 16347205  T
Q  300 gattgaacca 309  Q
    ||||||||||    
T  16347206 gattgaacca 16347215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 47418384 - 47418080
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||| ||||| |||||   ||||||||| |||||||||||||||| |||| |||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  47418384 tgtggaaatgtaacgtctagccataataagcattcacaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatcagccaccaactttaaagat 47418285  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||| |||||||||||    
T  47418284 ccaattaaattgtaacctcttttgtaataactagccacctaggagttataacactaattatgttatgattgtaagcatttcagcatccaagcctatttcc 47418185  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtgttgtgagagctttgactcttttttggttctg 299  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||         ||||||||||||||||||| ||||||| ||  ||||||||||||    
T  47418184 tatataaagggggcgaaaataatgaag-ggacaggtagaattttgat--aaaaaaatacactttgtgtgttgtga-agctttg-cttctttttggttctg 47418090  T
Q  300 gattgaacca 309  Q
    ||||||||||    
T  47418089 gattgaacca 47418080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 23460478 - 23460720
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac-aacttcaaagat 99  Q
    ||||||||||||| |||||   |||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| | |||| ||||| ||||||    
T  23460478 tgtggaattgtaacgtctagccataataagccttcacaaatcaatgtgcaaatgaatatgtaaccttctcatgcattgatcaaccaccaactttaaagat 23460577  T
Q  100 ccaatttaattgtaacctctcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcc 199  Q
    |||||| ||||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||||||| |||| ||| ||| |||||||||||    
T  23460578 ccaattaaattgtaacctcttttgtaataactagccacctaggaattataacactaattatgctatgattgtaagtttttcagcttccaagcctatttcc 23460677  T
Q  200 tatataaagggggcgaaaataatgaagaggacaagtagaattt 242  Q
    |||| |||||||||||||||||||||| |||||||| ||||||    
T  23460678 tataaaaagggggcgaaaataatgaaggggacaagttgaattt 23460720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 47566751 - 47566875
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagcca-caacttcaaagat 99  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||| |||| |||||||||||| ||||  ||||||| | ||| || ||||||||||    
T  47566751 tgtggaattgtaatttctagaaataataagctttcacaaatcaatgtgcaaatgaatatgtaaccttctcaagcattgatcaaccaccagcttcaaagat 47566850  T
Q  100 ccaatttaattgtaacctctcttgt 124  Q
    |||||| ||||||||||||||||||    
T  47566851 ccaattaaattgtaacctctcttgt 47566875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25531912 - 25531998
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  25531912 tgtggaattgtaacgtctagaaataataagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 25531998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 2309433 - 2309356
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2309433 tacactttgtgtgttgtgaaa-ctttgcttcttttt-ggttctggattgaaccaagtttatcgaatcttatcaatggctt 2309356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 16022576 - 16022499
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||| |||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  16022576 tacactttgtgtgttgtga-agctttggttctttat-ggttctggattgaaccaagtttatcgaatcttatcaatggctt 16022499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 309
Target Start/End: Complemental strand, 11033 - 10894
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtg 266  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||  | || |||||||||||||||         ||||||||| |    
T  11033 attgtaagcttttcagcattctagcctattacctatataaagggggcgaaaataatga--atgataagtagaattttgattaaaaaaaatacactttgcg 10936  T
Q  267 tgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    |||||||| |||||||  |||||||||||||||||||||||||    
T  10935 tgttgtga-agctttgcttcttttttggttctggattgaacca 10894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1811 - 1725
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  1811 tgtggaattgtaacgtctagaaataataagctttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 1725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 1526 - 1465
Alignment:
Q  272 tgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  1526 tgagagctttgtctcttat--ggttctggattgaaccaagtttatcgaatcttatcaatggctt 1465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 244849 - 244763
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  244849 tgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 244763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29949860 - 29949946
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  29949860 tgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 29949946  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29951498 - 29951584
Alignment:
Q  1 tgtggaattgtaatgtctataaataataagccttcacaaatcaatgtgaaaatcaatatgtaacctcctcatccattgattagccac 87  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  29951498 tgtggaattgtaacgtctagaaataattagccttcacaaatcaatgtgcaaatgaatatgtaacctcctcatgcattgattagccac 29951584  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 38937056 - 38936979
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38937056 tacactttgtgtgttgtga-agctttgcttcttttt-ggttctggattgaaccaagtttatcgaatcttatcaatggctt 38936979  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 16781021 - 16781148
Alignment:
Q  119 tcttgtaataactagccacctaggaggtataacactaattatactatgattgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaa 218  Q
    ||||||||||| ||||||| || ||| |||  || |||| ||  ||| |||||||| |||| ||||  ||||||||||| ||||||||| | | ||||||    
T  16781021 tcttgtaataattagccacataagagttatttcattaatcatgatataattgtaagattttcagcactctagcctattttctatataaatgagacgaaaa 16781120  T
Q  219 taatgaagaggacaagtagaattttgat 246  Q
    ||||||| | || | ||| |||||||||    
T  16781121 taatgaataagatatgtaaaattttgat 16781148  T

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Target: scaffold0083 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 35182 - 35105
Alignment:
Q  256 tacactttgtgtgttgtgagagctttgactcttttttggttctggattgaaccaagtttatcgaatcttatcaatggctt 335  Q
    ||||||||||||||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35182 tacactttgtgtgttgtga-agctttgcttcttttt-ggttctggattgaaccaagtttatcgaatcttatcaatggctt 35105  T

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Target: scaffold0094 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 13128 - 13049
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgat 246  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  13128 attgtaagcttttcaacattctagcctattacctatataaagggggcgaaaataatgaagaagggaagtagaattttgat 13049  T

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Target: scaffold0139 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 6347 - 6482
Alignment:
Q  169 tgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgatnnnnnnnnntacactttgtgtg 268  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |  | |||||||||||||||         |||||||||||||    
T  6347 tgtaagcttttcagcattctagcctattacctatataaagggggcgaaaataatgaata--agaagtagaattttgat-aaaaaaaatacactttgtgtg 6443  T
Q  269 ttgtgagagctttgactcttttttggttctggattgaacca 309  Q
     ||||| ||||||| ||  ||||||||||||||||||||||    
T  6444 atgtga-agctttg-cttctttttggttctggattgaacca 6482  T

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Target: scaffold0139; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 4681 - 4755
Alignment:
Q  169 tgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttga 245  Q
    ||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||| |  | ||||||||||||||    
T  4681 tgtaagcttttcagcattctagcctagtacctatataaagggggcgaaaataatgaaca--agaagtagaattttga 4755  T

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Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 309
Target Start/End: Complemental strand, 374973 - 374834
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgat-nnnnnnnnntacactttgt 265  Q
    ||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||| |  |||||||||||||||||          ||||||||||    
T  374973 attgtaagcttttcagcattctagcctattacctatataaagagggcgaaaataatgaata--acaagtagaattttgataaaaaaaaaatacactttgt 374876  T
Q  266 gtgttgtgagagctttgactcttttttggttctggattgaacca 309  Q
    ||||||||| ||||||| ||   |||||||||||||||||||||    
T  374875 gtgttgtga-agctttg-cttccttttggttctggattgaacca 374834  T

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Target: scaffold0321 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 5676 - 5753
Alignment:
Q  167 attgtaagctttttagcatcctagcctatttcctatataaagggggcgaaaataatgaagaggacaagtagaattttgat 246  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |  | |||||||||||||||    
T  5676 attgtaagcttttcagcattctagcctattacctatataaagggggcgaaaataatgaata--ataagtagaattttgat 5753  T

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