View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2734_low_19 (Length: 322)

Name: NF2734_low_19
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2734_low_19
NF2734_low_19
[»] chr7 (9 HSPs)
chr7 (1-209)||(4303011-4303219)
chr7 (87-209)||(11001101-11001223)
chr7 (112-197)||(1369529-1369614)
chr7 (109-209)||(8915448-8915547)
chr7 (89-209)||(1217487-1217605)
chr7 (143-206)||(1786420-1786483)
chr7 (87-209)||(13883010-13883133)
chr7 (109-206)||(11228432-11228528)
chr7 (90-203)||(27142353-27142462)
[»] chr2 (11 HSPs)
chr2 (1-209)||(31635889-31636097)
chr2 (5-209)||(35681816-35682016)
chr2 (113-204)||(280294-280385)
chr2 (140-209)||(27952652-27952721)
chr2 (87-209)||(33053109-33053230)
chr2 (147-207)||(2165624-2165684)
chr2 (87-208)||(32162243-32162363)
chr2 (110-209)||(22011095-22011194)
chr2 (151-208)||(23457389-23457446)
chr2 (109-185)||(18945663-18945739)
chr2 (109-209)||(36648585-36648685)
[»] chr1 (8 HSPs)
chr1 (109-206)||(10926906-10927003)
chr1 (87-201)||(13441924-13442036)
chr1 (87-209)||(23988913-23989035)
chr1 (141-206)||(8966030-8966095)
chr1 (109-209)||(10927814-10927914)
chr1 (111-206)||(40805571-40805666)
chr1 (109-194)||(31915247-31915332)
chr1 (141-209)||(31522576-31522644)
[»] chr8 (7 HSPs)
chr8 (112-209)||(23573249-23573346)
chr8 (81-209)||(2688855-2688981)
chr8 (2-154)||(37192910-37193063)
chr8 (147-209)||(22922177-22922239)
chr8 (136-207)||(22512377-22512448)
chr8 (151-209)||(26377776-26377834)
chr8 (109-203)||(24577811-24577905)
[»] chr6 (14 HSPs)
chr6 (88-209)||(18203126-18203246)
chr6 (86-209)||(22873499-22873622)
chr6 (109-209)||(34374062-34374162)
chr6 (109-209)||(22888965-22889065)
chr6 (89-209)||(12881715-12881834)
chr6 (109-209)||(22910508-22910608)
chr6 (147-209)||(3541947-3542009)
chr6 (147-209)||(30049617-30049679)
chr6 (147-209)||(30051904-30051966)
chr6 (109-209)||(12778684-12778782)
chr6 (148-198)||(18720019-18720069)
chr6 (149-209)||(32361109-32361169)
chr6 (146-201)||(8047663-8047718)
chr6 (179-207)||(11194398-11194426)
[»] chr5 (3 HSPs)
chr5 (87-201)||(21845225-21845335)
chr5 (88-209)||(18252109-18252230)
chr5 (147-202)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (109-201)||(22716324-22716416)
chr4 (109-201)||(22988801-22988893)
chr4 (113-209)||(6659656-6659751)
chr4 (109-209)||(10494634-10494734)
chr4 (109-207)||(7635000-7635098)
chr4 (147-209)||(13085421-13085483)
chr4 (131-201)||(9260297-9260367)
[»] scaffold0054 (3 HSPs)
scaffold0054 (87-207)||(49002-49122)
scaffold0054 (109-209)||(10361-10461)
scaffold0054 (87-207)||(37404-37523)
[»] chr3 (5 HSPs)
chr3 (87-208)||(365879-365999)
chr3 (87-209)||(8536658-8536780)
chr3 (159-209)||(3064066-3064116)
chr3 (111-193)||(2473000-2473084)
chr3 (161-206)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (147-209)||(45943-46005)
[»] scaffold0024 (2 HSPs)
scaffold0024 (109-209)||(145444-145544)
scaffold0024 (109-209)||(144179-144282)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4303011 - 4303219
Alignment:
Q  1 atatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303011 atatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccggg 4303110  T
Q  101 tgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303111 tgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgat 4303210  T
Q  201 gtaggaggg 209  Q
    |||||||||    
T  4303211 gtaggaggg 4303219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 11001223 - 11001101
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||||| || || ||  ||||| ||||||||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||    
T  11001223 caatgggatccaggaggatgatctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagagg 11001124  T
Q  187 tggaggagactgatgtaggaggg 209  Q
    |||||||||||||||||||||||    
T  11001123 tggaggagactgatgtaggaggg 11001101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 1369529 - 1369614
Alignment:
Q  112 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagact 197  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  1369529 ttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagact 1369614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 8915547 - 8915448
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    ||||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||| ||||| || |||||||||||| ||||||||||||||||||||||    
T  8915547 ctcttgttcatcggaggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggagg 8915449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 1217605 - 1217487
Alignment:
Q  89 atgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtg 188  Q
    ||||||||| || |||||  |||||||| |||||||||  |||||||||||  || ||||||||||||| | ||||||||| |||||||||||| |||||    
T  1217605 atgggatccaggagggtggtctcttgttaattggaggacacgacatgcatga-aatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtg 1217508  T
Q  189 gaggagactgatgtaggaggg 209  Q
    ||||||||||||| |||||||    
T  1217507 gaggagactgatgcaggaggg 1217487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 1786420 - 1786483
Alignment:
Q  143 agctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 206  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  1786420 agctctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtagga 1786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 13883133 - 13883010
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacat--gcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcaga 184  Q
    ||||||||||| || |||||  |||||||| |||||||||| | ||||  ||||| ||| |||||||| | |||||||||||||| |||||||||| |||    
T  13883133 caatgggatccaggagggtggtctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagttctttaga 13883035  T
Q  185 ggtggaggagactgatgtaggaggg 209  Q
    |||||| |||||||||| |||||||    
T  13883034 ggtggacgagactgatgcaggaggg 13883010  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 11228432 - 11228528
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 206  Q
    ||||||||||||  |||||||  ||||||||||||| ||||||| | ||||||||||||||  | ||||||| ||||| |||| ||||||||||||||    
T  11228432 ctcttgttcattataggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtagga 11228528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 27142353 - 27142462
Alignment:
Q  90 tgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctc-tttatcaaaatgagaactcgggatcgagttcttcagaggtg 188  Q
    |||||| ||||||||||| ||  ||||||||||| ||| | |||||||| |||||||| ||||||| ||| |||||| ||| |||| ||||||    ||     
T  27142353 tgggattcgggtgggtgttcttctgttcattggaagagccaacatgcat-ggaagctcttttatcataataagaacttggggtcgatttcttc----gta 27142447  T
Q  189 gaggagactgatgta 203  Q
    |||||||||||||||    
T  27142448 gaggagactgatgta 27142462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31635889 - 31636097
Alignment:
Q  1 atatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccggg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31635889 atatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatgggatccggg 31635988  T
Q  101 tgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgat 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  31635989 tgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggaggagactgat 31636088  T
Q  201 gtaggaggg 209  Q
    |||||||||    
T  31636089 gtaggaggg 31636097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 35681816 - 35682016
Alignment:
Q  5 agaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtggg 104  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||| | ||| |||||||||||| ||||  ||||  ||||||||||||||||| |||||     
T  35681816 agaattatcaagtgagtctgctattgttggtaccttgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggt 35681915  T
Q  105 tgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag 204  Q
        ||||||||||||| ||||||| |||||||| | ||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| ||    
T  35681916 ----ctcttgttcattgaaggagtcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcag 35682011  T
Q  205 gaggg 209  Q
    |||||    
T  35682012 gaggg 35682016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 280385 - 280294
Alignment:
Q  113 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag 204  Q
    |||||||||||||| || ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  280385 tgttcattggaggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtag 280294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 27952721 - 27952652
Alignment:
Q  140 ggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27952721 ggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 27952652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 33053109 - 33053230
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||| | || |||||  |||||||| ||| |||||||||||||| ||| |||||||||||| | ||| ||||| |||| ||||||||||||||||    
T  33053109 caatgggattcaggagggtggtctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggtcgagttcttcagagg 33053207  T
Q  187 tggaggagactgatgtaggaggg 209  Q
    |||||||||||||||||| ||||    
T  33053208 tggaggagactgatgtagaaggg 33053230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 2165624 - 2165684
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 207  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2165624 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 2165684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 32162363 - 32162243
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||||  || |||||  |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||  | | ||||| |||||||     
T  32162363 caatgggatcaaggagggtggtctcttgttcattagag-agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagaga 32162265  T
Q  187 tggaggagactgatgtaggagg 208  Q
    ||||||||||| ||||| ||||    
T  32162264 tggaggagactaatgtaagagg 32162243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 22011095 - 22011194
Alignment:
Q  110 tcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    |||||||||| | ||||||| |||| |||| |||  ||||||| | ||||||||||| || |||||||||| |||||||||||||| ||||| |||||||    
T  22011095 tcttgttcatcgaaggagtcaacatacatgagaaattctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggaggg 22011194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 23457389 - 23457446
Alignment:
Q  151 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    |||| ||||||||||||||   |||||||||||||||||||| |||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtaggagg 23457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 18945663 - 18945739
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagag 185  Q
    ||||||||||||| ||||||  ||||| ||| ||| ||||| |||| |||||||| ||||||||||||| |||||||    
T  18945663 ctcttgttcattgcaggagttaacatgaatgagaaactcttaatcagaatgagaattcgggatcgagtttttcagag 18945739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 36648585 - 36648685
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 207  Q
    ||||| ||||||||| |||||  ||||||||| |||| |||| |||| ||  |||||| ||  |||||||||||| || ||||||||||| |||||||||    
T  36648585 ctcttattcattggaagagtcatcatgcatgg-aagcacttttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatgtaggag 36648683  T
Q  208 gg 209  Q
    ||    
T  36648684 gg 36648685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 10926906 - 10927003
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 206  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10926906 ctcttattcattggaggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagga 10927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 13442036 - 13441924
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||||| || || ||  |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||   |||||| |||||||||||    
T  13442036 caatgggatccaggaggatgatctcttgctcattggaggagtcaacatgcatgggaagctctttatcagaatgagaact--tgatcgaattcttcagagg 13441939  T
Q  187 tggaggagactgatg 201  Q
    |||||||||||||||    
T  13441938 tggaggagactgatg 13441924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 23988913 - 23989035
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||||| |  |||||  |||||| |||||| ||||||  ||||||| ||||||||||||| ||||| ||||||||  | ||||||||||||||||    
T  23988913 caatgggatccagaagggtgatctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagagg 23989012  T
Q  187 tggaggagactgatgtaggaggg 209  Q
    || |||||||| |||||||||||    
T  23989013 tgtaggagactaatgtaggaggg 23989035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 8966095 - 8966030
Alignment:
Q  141 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 206  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8966095 gaagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtagga 8966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 10927814 - 10927914
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    |||||||| |||| | ||||| || |||||| ||| |||||||| | |||||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  10927814 ctcttgtttattgtaagagtcaacttgcatgagaaactctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagg 10927913  T
Q  209 g 209  Q
    |    
T  10927914 g 10927914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 40805571 - 40805666
Alignment:
Q  111 cttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 206  Q
    ||||||||| |||||||||  |||||||| ||| ||| |||||| ||  |||||||||| |||| ||||| | |||||||||||||||||||||||    
T  40805571 cttgttcatcggaggagtcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtagga 40805666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 31915247 - 31915332
Alignment:
Q  109 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag 194  Q
    ||||||||||||||||||||| ||| || |||| || ||||| || | || ||||||||||| | ||||||||||||||||||||||    
T  31915247 ctcttgttcattggaggagtcaacaatgaatggaaaactctt-attagaacgagaactcggggttgagttcttcagaggtggaggag 31915332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 31522576 - 31522644
Alignment:
Q  141 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||| |||||| || |||||||||   |||||||||||||||||||| | | ||||||||||||||    
T  31522576 gaagctcattatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggaggg 31522644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 23573249 - 23573346
Alignment:
Q  112 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||| ||||    
T  23573249 ttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaaggg 23573346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 2688855 - 2688981
Alignment:
Q  81 ttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttctt 180  Q
    |||| ||||||||||||  | |||||  ||| ||||||||||||||||| ||||||||||||| ||||  || | |||||||||||| ||||||||||||    
T  2688855 ttcacccaatgggatccatgagggtgatctcatgttcattggaggagtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttctt 2688952  T
Q  181 cagaggtggaggagactgatgtaggaggg 209  Q
    || |||||||||||||| |||||||||||    
T  2688953 cataggtggaggagactcatgtaggaggg 2688981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 37192910 - 37193063
Alignment:
Q  2 tatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggt 101  Q
    |||||||||||||||||  ||||| |||||||||||||||| ||||| | ||| |||||||||||| ||||| ||||||||||  ||||||||||| ||     
T  37192910 tatagaattatcaagtgcgtctgcaattgttggtacattgctcagtggctgctttgtccataaaaagggaccctcacagttcactcaatgggatccagga 37193009  T
Q  102 gggtgtgctcttg-ttcattggaggagtcgacatgcatgggaagctctttatca 154  Q
    || ||| |||||| ||  ||||||||||| ||||||||||  ||||||| ||||    
T  37193010 ggatgttctcttgtttttttggaggagtcaacatgcatggagagctcttcatca 37193063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 22922239 - 22922177
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22922239 ctttatgaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 22922177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 22512448 - 22512377
Alignment:
Q  136 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 207  Q
    |||||||||||  |||||| ||| |||||||||| |||||||||| |||||||||||||||||||| |||||    
T  22512448 catgggaagcttcttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggag 22512377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 26377776 - 26377834
Alignment:
Q  151 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggaggg 26377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 24577905 - 24577811
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgta 203  Q
    |||||||| |||||||||||  | ||||| | |||| ||| ||||| || ||||||||  | |||| ||||||||| ||||||||||||||||||    
T  24577905 ctcttgtttattggaggagtaaatatgcaagcgaagttctgtatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatgta 24577811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 18203126 - 18203246
Alignment:
Q  88 aatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggt 187  Q
    |||||||||  || |||||  |||||||||||| |||||||| |||||||||| || |||||||| |||||||||||||||| |||||||||||||||||    
T  18203126 aatgggatctaggagggtggtctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggt 18203224  T
Q  188 ggaggagactgatgtaggaggg 209  Q
    ||||||||||||||||||||||    
T  18203225 ggaggagactgatgtaggaggg 18203246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 22873499 - 22873622
Alignment:
Q  86 ccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagag 185  Q
    |||||||||||| || ||||   ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| ||| | ||||    
T  22873499 ccaatgggatccaggagggttgtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagag 22873598  T
Q  186 gtggaggagactgatgtaggaggg 209  Q
    ||||| ||||||||||||||||||    
T  22873599 gtggatgagactgatgtaggaggg 22873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 34374162 - 34374062
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||| ||||    
T  34374162 ctcttgttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagg 34374063  T
Q  209 g 209  Q
    |    
T  34374062 g 34374062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 22888965 - 22889065
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  22888965 ctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 22889064  T
Q  209 g 209  Q
    |    
T  22889065 g 22889065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 12881715 - 12881834
Alignment:
Q  89 atgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtg 188  Q
    ||||||||| || |||||  ||||||||||||| || |||| |||||||||||||| |||| |||  ||||||| |||||| |||||||||||  |||||    
T  12881715 atgggatccaggagggtggtctcttgttcattgaagaagtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtg 12881813  T
Q  189 gaggagactgatgtaggaggg 209  Q
    |||||||||||||||||||||    
T  12881814 gaggagactgatgtaggaggg 12881834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 22910508 - 22910608
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  22910508 ctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 22910607  T
Q  209 g 209  Q
    |    
T  22910608 g 22910608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 3541947 - 3542009
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3541947 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 3542009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 30049617 - 30049679
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30049617 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30049679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 30051904 - 30051966
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30051904 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30051966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 12778782 - 12778684
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    ||||||||||||||||||||| |||||||  |||| ||||  |||| |||||||| | ||| || |||||||||||||||||||||||||||||| ||||    
T  12778782 ctcttgttcattggaggagtcaacatgcaaaggaaactct--atcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagagg 12778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 18720019 - 18720069
Alignment:
Q  148 tttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactg 198  Q
    ||||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  18720019 tttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 32361109 - 32361169
Alignment:
Q  149 ttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    |||||| |||||||||||| | ||||||| || |||||||||| ||||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggaggg 32361169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 8047718 - 8047663
Alignment:
Q  146 tctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 201  Q
    ||||||| | ||| |||||||||| || ||||||||||||||||||||||| ||||    
T  8047718 tctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatg 8047663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 11194398 - 11194426
Alignment:
Q  179 ttcagaggtggaggagactgatgtaggag 207  Q
    |||||||||||||||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggag 11194426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 21845335 - 21845225
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||||||||||| |    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  21845335 caatgggatccgggtggtt----tcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagagg 21845240  T
Q  187 tggaggagactgatg 201  Q
    ||||  |||||||||    
T  21845239 tggaacagactgatg 21845225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 18252109 - 18252230
Alignment:
Q  88 aatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggt 187  Q
    |||||||| | || |||||  ||||||| ||||||||||||| |||||||||| ||||| ||||||| |||||||||||||| || ||||||||||||||    
T  18252109 aatgggattcaggagggtggtctcttgtccattggaggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggt 18252208  T
Q  188 ggaggagactgatgtaggaggg 209  Q
     |||||| |||||| |||||||    
T  18252209 agaggaggctgatgcaggaggg 18252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 19677684 - 19677629
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgt 202  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19677684 ctttataaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgt 19677629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 22716324 - 22716416
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 201  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22716324 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22716416  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 22988893 - 22988801
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 201  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22988893 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22988801  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 6659751 - 6659656
Alignment:
Q  113 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||| ||||||||||| | || |||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||||||||||    
T  6659751 tgttctttggaggagtcaatattcatgggaagctctttatcaagatgagaatttggg-tcgagttcttcagaggtagaggagactgatgtaggaggg 6659656  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 10494634 - 10494734
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  || |||||| | | |||||||||||||| || ||| ||||||||||| ||||    
T  10494634 ctcttgttcattggaggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgagg 10494733  T
Q  209 g 209  Q
    |    
T  10494734 g 10494734  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 7635000 - 7635098
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 207  Q
    ||||||||||| ||||||||| ||||||||||| |||| ||||| | |||||||| | ||| ||||||||||||||| |||||||||||||||| ||||    
T  7635000 ctcttgttcatcggaggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggag 7635098  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 13085483 - 13085421
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  13085483 ctttatcaagatgagaactcggggtcgagttcttcagagatggaagagactgatgtaggaggg 13085421  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 9260297 - 9260367
Alignment:
Q  131 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 201  Q
    |||| |||| |||| ||||||||||||| |||||||||| |||||||||| ||| || ||||||| |||||    
T  9260297 acatccatgagaagttctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatg 9260367  T

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Target: scaffold0054 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 49002 - 49122
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagag 185  Q
    ||||||||||||||||||||| ||| ||||||| ||| ||||| |||||||||| ||| ||||| |||| ||| |||||||||| | |||||||||||||    
T  49002 caatgggatccgggtgggtgttctcgtgttcataggaagagtcaacatgcatgg-aagttcttttatcagaataagaactcggggttgagttcttcagag 49100  T
Q  186 gtggaggagactgatgtaggag 207  Q
    ||||||||||||||||||||||    
T  49101 gtggaggagactgatgtaggag 49122  T

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Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 10361 - 10461
Alignment:
Q  109 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 208  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  10361 ctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 10460  T
Q  209 g 209  Q
    |    
T  10461 g 10461  T

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Target: scaffold0054; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 37404 - 37523
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagag 185  Q
    ||||||||||||| |||| || |||  |||||| ||| ||||| |||||||||| ||||||||| |||| ||| |||| | ||| |||||||||||||||    
T  37404 caatgggatccggttgggcgttctccggttcataggaagagtcaacatgcatgg-aagctcttttatcagaataagaatttggg-tcgagttcttcagag 37501  T
Q  186 gtggaggagactgatgtaggag 207  Q
    ||||||||||||||||||||||    
T  37502 gtggaggagactgatgtaggag 37523  T

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Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 365999 - 365879
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||||| || |||||  ||| ||||||||||| ||||| |||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||||    
T  365999 caatgggatcccggagggtggtctcctgttcattggaagagtcaacatacatgg-aagctctttatcaaaacgagaactcgaggtcgagttcttcagagg 365901  T
Q  187 tggaggagactgatgtaggagg 208  Q
    ||||||||| ||||| ||||||    
T  365900 tggaggagattgatgcaggagg 365879  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 8536780 - 8536658
Alignment:
Q  87 caatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagagg 186  Q
    ||||||||||| || |||||  ||||||||||||||| ||||| ||||  ||| ||| || ||||||| ||| |||||||||  |||||||||| |||||    
T  8536780 caatgggatccaggagggtgatctcttgttcattggaagagtcaacatatatgagaaactttttatcagaataagaactcggagtcgagttctttagagg 8536681  T
Q  187 tggaggagactgatgtaggaggg 209  Q
    |||| ||| ||||||||||||||    
T  8536680 tggaagaggctgatgtaggaggg 8536658  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 3064116 - 3064066
Alignment:
Q  159 gagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  3064116 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 3064066  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 2473084 - 2473000
Alignment:
Q  111 cttgttcattggaggagtcgacatgcatgggaagctcttt--atcaaaatgagaactcgggatcgagttcttcagaggtggagga 193  Q
    |||||||||||||| |||| ||||||||| |||| | |||  |||| |||||||||||||| |||||||||| | | ||||||||    
T  2473084 cttgttcattggagaagtcaacatgcatgagaagttttttttatcagaatgagaactcggggtcgagttctttaaaagtggagga 2473000  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  161 gaactcgggatcgagttcttcagaggtggaggagactgatgtagga 206  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 46005 - 45943
Alignment:
Q  147 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 209  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46005 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 45943  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 145444 - 145544
Alignment:
Q  109 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 207  Q
    ||||||||||||| ||||||| ||| || | ||  | |||||||||| ||| | |||||||| || |||||||| |||||||||||||||||||||||||    
T  145444 ctcttgttcattgaaggagtcaacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggag 145542  T
Q  208 gg 209  Q
    ||    
T  145543 gg 145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 144282 - 144179
Alignment:
Q  109 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag---actgatgtag 204  Q
    ||||||||||| | ||||||||||| || ||||  | |||||||||| ||| |||||||||| || |||||||||||| ||||||||   ||||||| ||    
T  144282 ctcttgttcatcgaaggagtcgacaatgaatggacaactctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgcag 144184  T
Q  205 gaggg 209  Q
    |||||    
T  144183 gaggg 144179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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