View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2734_low_5 (Length: 519)

Name: NF2734_low_5
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2734_low_5
NF2734_low_5
[»] chr4 (4 HSPs)
chr4 (227-501)||(23349852-23350126)
chr4 (36-106)||(23350675-23350745)
chr4 (229-295)||(17745936-17746002)
chr4 (117-165)||(19643848-19643897)
[»] chr3 (2 HSPs)
chr3 (227-295)||(12516443-12516511)
chr3 (251-295)||(12731327-12731371)
[»] chr6 (1 HSPs)
chr6 (205-296)||(19723313-19723404)
[»] chr7 (1 HSPs)
chr7 (198-296)||(12645008-12645106)
[»] scaffold0464 (1 HSPs)
scaffold0464 (254-295)||(11789-11830)
[»] scaffold0002 (1 HSPs)
scaffold0002 (250-295)||(379973-380018)
[»] chr5 (1 HSPs)
chr5 (202-295)||(22865993-22866086)
[»] chr2 (1 HSPs)
chr2 (102-146)||(10923081-10923125)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 227 - 501
Target Start/End: Complemental strand, 23350126 - 23349852
Alignment:
Q  227 ggagccttaaggcggtttgagttcggccatgtatcattgtgcggttggtcttctgaccggtccagaacaataaatgatatatactttctacttaatttct 326  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  23350126 ggagccttaaggtggtttgagttcggccatgtatcattgtgcggttggtcttctaaccggtccagaacaataaatgatatagactttctacttaatttct 23350027  T
Q  327 ttttaccaaaatttaaattggaaagcattaaaatctctccattttcaatttatagaatgaatgaagattatctttaaaacattttcatgattccttccca 426  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23350026 ttttaccaatatttaaatttgaaagcattaaaatctctcaattttcaatttatagaatgaatgaagattatctttaaaacattttcatgactccttccca 23349927  T
Q  427 ttttccacttttaaagtttgatatgtctatttcaaaactttcactttctacaaatagggcctcctgatctttacc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23349926 ttttccacttttaaagtttgatatgtctatttcaaaactttcactttctacaaatagggcctcctgatctttacc 23349852  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 23350745 - 23350675
Alignment:
Q  36 aataaattatcagtctggtgagaatggttgagttgaaaaagcggcagagaatgctatggtatgacgataac 106  Q
    |||||||||||||||  |||||||||||||||||||||  ||||||||||| |||  ||| ||||||||||    
T  23350745 aataaattatcagtcccgtgagaatggttgagttgaaacggcggcagagaaggctccggtgtgacgataac 23350675  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 17746002 - 17745936
Alignment:
Q  229 agccttaaggcggtttgagttcggccatgtatcattgtgcggttggtcttctgaccggtccagaaca 295  Q
    ||||||||| |||| | |||||||||||||||||  ||||| ||| |||||||||| ||||||||||    
T  17746002 agccttaagacggtgtaagttcggccatgtatcaacgtgcgattgatcttctgaccagtccagaaca 17745936  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 19643848 - 19643897
Alignment:
Q  117 ttatgcggcgtgtgattagggacggaaga-gacacatttaaggtgatcct 165  Q
    |||||||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  19643848 ttatgcggcgtgagattagggacggtagaggacacatataaggtgatcct 19643897  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 12516443 - 12516511
Alignment:
Q  227 ggagccttaaggcggtttgagttcggccatgtatcattgtgcggttggtcttctgaccggtccagaaca 295  Q
    |||| ||||||||||| | ||||||||||||| ||   |||||||||||| | ||||||||||||||||    
T  12516443 ggagtcttaaggcggtgtaagttcggccatgtgtcgacgtgcggttggtcctttgaccggtccagaaca 12516511  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 12731371 - 12731327
Alignment:
Q  251 ggccatgtatcattgtgcggttggtcttctgaccggtccagaaca 295  Q
    ||||| || |||| ||||||||||| |||||||||||||||||||    
T  12731371 ggccacgtgtcatcgtgcggttggtgttctgaccggtccagaaca 12731327  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 19723404 - 19723313
Alignment:
Q  205 gctggcgtgctctcttaggtgtggagccttaaggcggtttgagttcggccatgtatcattgtgcggttggtcttctgaccggtccagaacaa 296  Q
    ||||||||||||||||| ||| |||| ||| ||||||| | ||| || ||| || ||   ||||| ||| ||||||||||||||||||||||    
T  19723404 gctggcgtgctctcttaagtgcggagtcttgaggcggtgtaagtccgaccacgtgtcggcgtgcgattgatcttctgaccggtccagaacaa 19723313  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 12645008 - 12645106
Alignment:
Q  198 cattcaagctggcgtgctctcttaggtgtggagccttaaggcggtttgagttcggccatgtatcattgtgcggttggtcttctgaccggtccagaacaa 296  Q
    |||||||||| ||||||||  | ||| | ||| ||||||||  ||||  ||||||||| || |||| |||| ||||||||||| ||| |||||||||||    
T  12645008 cattcaagctagcgtgctccttcaggggcggaaccttaaggttgtttaggttcggccacgtgtcatcgtgcagttggtcttctaaccagtccagaacaa 12645106  T

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Target: scaffold0464 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 11789 - 11830
Alignment:
Q  254 catgtatcattgtgcggttggtcttctgaccggtccagaaca 295  Q
    ||||| |||| |||||||||||||||||||||||||| ||||    
T  11789 catgtgtcatcgtgcggttggtcttctgaccggtccaaaaca 11830  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 379973 - 380018
Alignment:
Q  250 cggccatgtatcattgtgcggttggtcttctgaccggtccagaaca 295  Q
    ||||||| | || |||||||||||||||||||||| ||||||||||    
T  379973 cggccatttgtcgttgtgcggttggtcttctgacctgtccagaaca 380018  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 22865993 - 22866086
Alignment:
Q  202 caagctggcgtgctctcttaggtgtggagccttaaggcggtttgagttcggccatgtatcattgtgcggttggtcttctgaccggtccagaaca 295  Q
    ||||||||||||||| |||| ||| |||| ||| |||||||   |||| |||||  | |||  ||| ||||||||||||||||| |||||||||    
T  22865993 caagctggcgtgctcccttaagtgcggagtcttgaggcggtgaaagtttggccacatgtcaacgtgtggttggtcttctgaccgatccagaaca 22866086  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 10923125 - 10923081
Alignment:
Q  102 ataacggttttcggtttatgcggcgtgtgattagggacggaagag 146  Q
    ||||| || ||||| ||||||||||||||||||| ||||||||||    
T  10923125 ataacagtcttcggcttatgcggcgtgtgattagagacggaagag 10923081  T

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