View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2734_low_8 (Length: 459)
Name: NF2734_low_8
Description: NF2734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2734_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 42616439 - 42616773
Alignment:
| Q |
18 |
ccaaccatggtgaactcttccatagctcttcttcaagaaaggtttagacaattagagaaagtaaaagaaaggagagaaggtaaacaacttcttagattgt |
117 |
Q |
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| T |
42616439 |
ccaaccatggtgaactcttccatagctcttcttcaagaaaggtttagacaattagagaaagtaaaagaaaggagagaaggtaaacaacttcttagattgt |
42616538 |
T |
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| Q |
118 |
tgtcaacagagaacaatacctcagcatcaacacaaaggttggtagttccaaataataggcaaactcatcatgattctctttctcttggactcaacttgac |
217 |
Q |
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| T |
42616539 |
tgtcaacagagaacaatacctcagcatcaacacaaaggttggtagttccaaataataggcaaactcatcatgattctctttctcttggactcaacttgac |
42616638 |
T |
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| Q |
218 |
aagcaagcaaggtgataaaagcaccatgaaatcaaacacatctttgagtccatggtcacaaggtgcatcatcaacatcaagaaattttgatacctcggat |
317 |
Q |
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| T |
42616639 |
aagcaagcaaggtgataaaagcaccatgaaatcaaacacatctttgagtccatggtcacaaggtgcatcatcaacatcaagaaattttgatacctcagat |
42616738 |
T |
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| Q |
318 |
gttgatacttcacttcatctgtaaattaattagtg |
352 |
Q |
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| T |
42616739 |
gttgatacttcacttcatctgtaaattaattagtg |
42616773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 42616835 - 42616870
Alignment:
| Q |
414 |
gtgtttgtgtatatgtgcatataccagtttcctatg |
449 |
Q |
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| T |
42616835 |
gtgtttgtgtatatgtgcatataccagtttcctatg |
42616870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 9587508 - 9587573
Alignment:
| Q |
31 |
actcttccatagctcttcttcaagaaaggtttagacaattagagaaagtaaaagaaaggagagaag |
96 |
Q |
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| T |
9587508 |
actcttccattgcacttctacaagagaggtttagacaattggaaagagtaaaagaaatgagagaag |
9587573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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