View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2735_high_1 (Length: 473)
Name: NF2735_high_1
Description: NF2735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2735_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Original strand, 47933299 - 47933741
Alignment:
| Q |
14 |
agaggaagaaaaattacagggtttgaatcatgtatttttctgatggtcattacttccgcgtatattctgtaggatcagtttgaaaaattgaccttttttc |
113 |
Q |
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| T |
47933299 |
agaggaagaaaaattacagggtttgaatcatgtatttttctgatggtcattacttc-gcgtatattctgtaggatcagtttgaaaaattgaccttttttc |
47933397 |
T |
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| Q |
114 |
cgaaaattccaagggaatgaaaccaagtggccattgcctccatgagatgatcttcttcttcgttgaacaagtctaagatagaatcgtcttggcaatcaag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47933398 |
cgaaaattccaagggaatgaaaccaagtggccattgcctccatgagatgatctgcttcttcgttgaacaagtctaagatagaatcgtctaggcaatcaag |
47933497 |
T |
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| Q |
214 |
ttgactatcaaattcaccttattttaatgatgtgaggtcaggacatgagaagctataatatattatagtttggaagtgcctcaagttcttgcataccata |
313 |
Q |
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| T |
47933498 |
ttgactatcaaattcaccttattttaatgatgtgaggtcaggacatgagaagctataatatattatagttcggaagtgcctcaagttcttgcatacca-a |
47933596 |
T |
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| Q |
314 |
ttgtttcaaattctttcacattcctaccctttgttccttacactgtatcatcaatagtgaaagccttgtatagagttttcagcactgttggcgaccttaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47933597 |
ttgtttcaaattctttcacattcctaccctttgttcattacactgtatcatcaatagtgaaagccttacatagagttttcagcactgttggcgaccttaa |
47933696 |
T |
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| Q |
414 |
ctctttttcaccctaagactacactctagcactgatttagtgtgt |
458 |
Q |
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| T |
47933697 |
ctctttttcaccctaagactacactctagcactgatttagtgtgt |
47933741 |
T |
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