View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2735_high_2 (Length: 399)
Name: NF2735_high_2
Description: NF2735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2735_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 2928949 - 2929320
Alignment:
| Q |
17 |
catggaatagattgagtcattatttcccaaaggacgacaccatagctgaagacatcagacctgcataaaagaataaatgagaaattattaagaaagaact |
116 |
Q |
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| T |
2928949 |
catggaatagattgagtcattatttcccaaaggacgacaccatagctgaagacatcagacctgcataaaagaataaatgagaaattattaagaaagaact |
2929048 |
T |
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| Q |
117 |
taagctttaatcgacattaccaatttaataagatccagtccttgcttagaagtacaaaatattttcccatgtcttgnnnnnnnaacaccgggcaaagtag |
216 |
Q |
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| T |
2929049 |
taagctttaatcgacattaccaatttaataagatccagtcattgcttagaagtgcaaaatattttcccatgtcttgtttttttaacaccgggcaaagtag |
2929148 |
T |
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| Q |
217 |
gacactgattgaaaaaacttcaaggacgtccatttagaaatttctaatcaaatataagattgtaaactctatatcaaggctgaacagttatgattgaagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2929149 |
gacactgattgaaaaaacttcaaggacgtccatttagaaatttctaatcaaatataagattgtaaactctatatcaaggctgaacagttacgattgaagt |
2929248 |
T |
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| Q |
317 |
atttgacttcgtacaaaattgcaaacaaatacagctgaccacaattgagacaagttattgtgattgattcat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929249 |
atttgacttcgtacaaaattgcaaacaaatacagctgaccacaattgagacaagttattgtgattgattcat |
2929320 |
T |
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