View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2735_high_3 (Length: 373)
Name: NF2735_high_3
Description: NF2735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2735_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 8443637 - 8443291
Alignment:
| Q |
18 |
ttaaacaggttcataactatcacgttaattatattatagtcttaatggtagaataattatatcgaattatatgcgcaataccttatgaaaaggtcttctt |
117 |
Q |
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| T |
8443637 |
ttaaacaggttcataactatcacgttaattatattatagtcttaatggtaggataattatatcgaattatatgcgcaataccttatgaaaaggtcttctt |
8443538 |
T |
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| Q |
118 |
ttttctaagccaatatcgtatccattttatttaaggtaccattacggtctttctaatcatttatcgacaagtattttgaggaaggaactatggaaaaaag |
217 |
Q |
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| T |
8443537 |
ttttctaagccaatatcgtatccattttatttaaggtaccattacggtctttctaatcatttctcgacaagtattttgaggaaggaactatgga-aaaag |
8443439 |
T |
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| Q |
218 |
agagaaaacgtaagttgagcaaaaacagtgcgatcaaccaacgtgtaagtcacgaattggtgaatttgttattcaactttacgtagaagataaacaaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8443438 |
agagaaaacgtaagttgagcaaaaacagtgcgatcaaccaacgtgtaagtcacgaattggtgaatttgttattcaactttacgtagaagataaacaaaga |
8443339 |
T |
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| Q |
318 |
aaagacnnnnnnntaactccaaaacattcctcctaagggcatgcctttg |
366 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8443338 |
aaagacaaaaaaa-aactccaaaacattcctcctaagggcatgcctttg |
8443291 |
T |
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