View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2735_high_5 (Length: 296)
Name: NF2735_high_5
Description: NF2735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2735_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 364581 - 364413
Alignment:
| Q |
16 |
atgaagtatgaacattataagttaatagagtgaaaactgaaaaagtgtaaaagtaataaactaacaagatagaagatgggagaggagatagagtgttgtt |
115 |
Q |
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| T |
364581 |
atgaagtatgaacattataagttaatagagtgaaaactgaaaaagtgtaaaagtaataaactaacaagatagaagatgggagaggaggtagagtgttgtt |
364482 |
T |
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| Q |
116 |
gttgttgtttggtgatggaggaagaggaaggttgtggaagaagtgaggaggtggttttgttgtggtcgt |
184 |
Q |
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| T |
364481 |
gttgttgtttggtgatggaggaagaggaaggttgtggaagaagtgaggaggtggttttgttgtggtcgt |
364413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 364348 - 364319
Alignment:
| Q |
249 |
tggttgtcttctttttctggaggtgctgcc |
278 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
364348 |
tggttgtcttctttttctggaggtgctgcc |
364319 |
T |
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