View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2735_high_6 (Length: 250)
Name: NF2735_high_6
Description: NF2735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2735_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38274007 - 38274253
Alignment:
| Q |
1 |
tccaaattataaatcactatgatcaatctattccctttataaatcacttaattatggttgtcaataagggaaacaaaattcttttcccacccaattaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38274007 |
tccaaattataaatcactatgatcaatctattccctttataaatcacttaattatggttctcaataagggaaacaaaattcttttcccacccaattaatt |
38274106 |
T |
|
| Q |
101 |
tattgcgcgccctccaaattgatcatttta-------atggattttataatccaaagagtatttgacattttttagattataaaatctgaactgtatata |
193 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38274107 |
tattaagcgccctccaaattgatcattttacctttatttggattttataatccaaagagtatttgacattttttagattataaaatctgaactgtattta |
38274206 |
T |
|
| Q |
194 |
tacaattttgatcaaattcaaatcatatttcaaattttatattcatc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38274207 |
tacaattttgatcaaattcaaatcatatttcaaattttatattcatc |
38274253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 38273917 - 38273973
Alignment:
| Q |
132 |
tggattttataatccaaagagtatttgacattttttagattataaaatctgaactgt |
188 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||||| ||| || ||||||| |
|
|
| T |
38273917 |
tggattttataatccaaaatgtatttgacgtttttttgattaaaaagtccgaactgt |
38273973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 28671926 - 28671858
Alignment:
| Q |
134 |
gattttataatccaaagagtatttgacattttttagattataaaatctgaactgtatatatacaattttg |
203 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
28671926 |
gattttataatccatagtgtatttgaccttttt-agattataaaatctgaattgtatttactcaattttg |
28671858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University