View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2735_low_5 (Length: 297)
Name: NF2735_low_5
Description: NF2735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2735_low_5 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 48913253 - 48912956
Alignment:
| Q |
1 |
taccatagccttagagtataatttccaccaaatcacgtattttaagaatatagatatataaaagaaaatgctaaacatcttgagagatattgtcccgaga |
100 |
Q |
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| T |
48913253 |
taccatagccttagagtatgatttccaccaaatcacgtattttaagaatatagatatataaaagaaaatgctaaacatcttgagagatattgtcccgaga |
48913154 |
T |
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| Q |
101 |
gtatcgcgaagtcatatgattggctaattcacaactagttgccgtgttttccacta-tcaaagattaaagtggcagcctttaacacataacatcacaagt |
199 |
Q |
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| T |
48913153 |
gtatcgcgaagtcatatgattggctaattcacaactagttgccgtgttttccactagtcaaagattaaagtggcagcctttaacacataacatcacaagt |
48913054 |
T |
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| Q |
200 |
cctcgtgttttcatgaacaaactcttcgttgtgtatagcacaactaatgtataaatcaatttcgcgatttgataccaaagcgtcatttatgatataat |
297 |
Q |
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| T |
48913053 |
cctcgtgttttcgtgaacaaactcttcattgtgtatagcacaactcatgtataaatcaatttcacgatttgataccaaagcgtcatttatgatataat |
48912956 |
T |
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Target: scaffold0536 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 8241 - 8201
Alignment:
| Q |
22 |
tttccaccaaatcacgtattttaagaatatagatatataaa |
62 |
Q |
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| T |
8241 |
tttccaccaaatcacgtattttcaaaatatagatatataaa |
8201 |
T |
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