View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_12 (Length: 442)
Name: NF2736_high_12
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 22571253 - 22571662
Alignment:
| Q |
18 |
gtatgcatgtatctc--taaaatttggtttagttgatgttgataaagagttgaccaaaatcctctnnnnnnntaaagatttgacaaatatttcgcaatat |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||| |
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| T |
22571253 |
gtatgcatgtatctcaataaaatttggtttagttgatgttgataaagagttgaccaataacctctaaaaaaataaagatt-gacaaatatttcgcaatat |
22571351 |
T |
|
| Q |
116 |
gaaggctgctttaatccttgagtttgtttgactctggagagctttcagtatcatcggtagatttcatacatgggttgttttgtttttggacagggacctt |
215 |
Q |
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|||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |
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| T |
22571352 |
gaaggcggctttgatccttgagtttgtttgactctggtgagctttcagtatcatcggtaggtttcatacatgggttgttttgtttttggacgggggcctt |
22571451 |
T |
|
| Q |
216 |
gtgttgcggtgcactgctagaactgcttgctttgctaacatgatttgaa--------tgatgcactcttctctttgtcatcagtattgttatgtggagaa |
307 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
22571452 |
gtgttgcggtgcactgctagaactacttgctttgctaacatgatttgaatctttggttgctgcactattctctttgtcatcagtattgttctgtagagaa |
22571551 |
T |
|
| Q |
308 |
tacctttcgaaatttgagaaatctatgggagatttctctattagttctaccttcatagttaggttggacgcttcaaaaacggtccaaacggtctgcaatc |
407 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| || |||||| |||||||||| |||| |||||||||||||||||| |
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| T |
22571552 |
tacctttcgaaatttgagaaatctatgggggatttctctatcaattctaccttcaaagctaggtttgacgcttcaacaacgatccaaacggtctgcaatc |
22571651 |
T |
|
| Q |
408 |
ccatcttctct |
418 |
Q |
| |
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||||||||||| |
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| T |
22571652 |
ccatcttctct |
22571662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 185 - 418
Target Start/End: Complemental strand, 3537164 - 3536923
Alignment:
| Q |
185 |
atgggttgttttgtttttggacagggaccttgtgttgcggtgcactgctagaactgcttgctttgctaacatgatttgaat--------gatgcactctt |
276 |
Q |
| |
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|||||||||| || |||||||||||| ||||| | | |||||||||| ||||||||||||||||||| |||| ||||||| | |||||| || |
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| T |
3537164 |
atgggttgttctgcttttggacaggggccttgactggaggtgcactgccagaactgcttgctttgctagcatggtttgaatctttgactgctgcactttt |
3537065 |
T |
|
| Q |
277 |
ctctttgtcatcagtattgttatgtggagaatacctttcgaaatttgagaaatctatgggagatttctctattagttctaccttcatagttaggttggac |
376 |
Q |
| |
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|||||||||||||| | ||| ||||||||||| ||| |||||||||||||| |||||| ||||||||||||| ||| |||| | || |||||||||| |
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| T |
3537064 |
ctctttgtcatcagcttggttctgtggagaatatcttctgaaatttgagaaatttatgggggatttctctattaattccgcctttaaagctaggttggac |
3536965 |
T |
|
| Q |
377 |
gcttcaaaaacggtccaaacggtctgcaatcccatcttctct |
418 |
Q |
| |
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|||||| |||||| ||||| ||||| ||| ||||||||||| |
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| T |
3536964 |
gcttcagcaacggtacaaacagtctgtaattccatcttctct |
3536923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 418
Target Start/End: Complemental strand, 30048613 - 30048536
Alignment:
| Q |
341 |
ttctctattagttctaccttcatagttaggttggacgcttcaaaaacggtccaaacggtctgcaatcccatcttctct |
418 |
Q |
| |
|
|||||||||| |||| |||||| || || ||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
30048613 |
ttctctattaattctgccttcaaagctaagttggacgcttcagcaacggtccaaacagtctgtaatcccatcttctct |
30048536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 418
Target Start/End: Complemental strand, 30050900 - 30050823
Alignment:
| Q |
341 |
ttctctattagttctaccttcatagttaggttggacgcttcaaaaacggtccaaacggtctgcaatcccatcttctct |
418 |
Q |
| |
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|||||||||| |||| |||||| || || ||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
30050900 |
ttctctattaattctgccttcaaagctaagttggacgcttcagcaacggtccaaacagtctgtaatcccatcttctct |
30050823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 185 - 418
Target Start/End: Original strand, 22925595 - 22925836
Alignment:
| Q |
185 |
atgggttgttttgtttttggacagggaccttgtgttgcggtgcactgctagaactgcttgctttgctaacatgatttgaat--------gatgcactctt |
276 |
Q |
| |
|
|||||||||| || |||||||| ||| |||| | | ||| |||||| |||||||||||||||||||||||| ||||||| | |||||| || |
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| T |
22925595 |
atgggttgttctgcttttggacgggggacttgactggaggtacactgccagaactgcttgctttgctaacatggtttgaatctttgactggtgcactttt |
22925694 |
T |
|
| Q |
277 |
ctctttgtcatcagtattgttatgtggagaatacctttcgaaatttgagaaatctatgggagatttctctattagttctaccttcatagttaggttggac |
376 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||| ||| |||||||||||||| | | || ||||||| ||||| ||| |||| | || |||||||||| |
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| T |
22925695 |
ctctttgtcatcagcttggttctgtggagaatatcttctgaaatttgagaaatttctaggggatttctatattaattccgcctttaaagataggttggac |
22925794 |
T |
|
| Q |
377 |
gcttcaaaaacggtccaaacggtctgcaatcccatcttctct |
418 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||||||| |
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|
| T |
22925795 |
gcttcagcaacggtccaaacagtctgtaatcccatcttctct |
22925836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 418
Target Start/End: Complemental strand, 2157027 - 2156867
Alignment:
| Q |
259 |
tttgaatgatgcactcttctctttgtcatcagtattgttatgtggagaatacctttcgaaatttgagaaatctatgggagatttctctattagttctacc |
358 |
Q |
| |
|
||||| || |||||| |||||||||||||||| | ||| ||||||||||| ||| |||||||||||||| | || | |||||||| |||| ||| || |
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| T |
2157027 |
tttgattgctgcacttttctctttgtcatcagcttggttctgtggagaatatcttctgaaatttgagaaatttctgagggatttctcgattaattccgcc |
2156928 |
T |
|
| Q |
359 |
-ttcatagttaggttggacgcttcaaaaacggtccaaacggtctgcaatcccatcttctct |
418 |
Q |
| |
|
|| | || ||||| ||||||||| ||||||||||| ||| | ||||||||||||||| |
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| T |
2156927 |
tttgaaagctaggtgtgacgcttcagcaacggtccaaatagtcggtaatcccatcttctct |
2156867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 32162940 - 32162996
Alignment:
| Q |
358 |
cttcatagttaggttggacgcttcaaaaacggtccaaacggtctgcaatcccatctt |
414 |
Q |
| |
|
||||| || |||||||||| ||||| |||||||||||| || |||||||||||||| |
|
|
| T |
32162940 |
cttcaaagctaggttggacacttcagcaacggtccaaacagtttgcaatcccatctt |
32162996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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