View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2736_high_2 (Length: 764)

Name: NF2736_high_2
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2736_high_2
NF2736_high_2
[»] chr1 (3 HSPs)
chr1 (453-745)||(38014485-38014777)
chr1 (198-481)||(38014849-38015137)
chr1 (36-152)||(38015313-38015429)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 453 - 745
Target Start/End: Complemental strand, 38014777 - 38014485
Alignment:
Q  453 attctcttaaaagtgcataccctatgcatggacactttggttcagtgttcatttcatctactcatacttaatatacatcaaacctgcttgcttccctgtt 552  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  38014777 attctcttaaaagtgcataccctatggttagacactttggttcagtgttcattttatctactcatacttaatatacgtcaaacctgcttgcttccctgtt 38014678  T
Q  553 tatgtttttatttgctttgtttgcagcttgagaaaggagagaatttcgttgatgtgcttaacccttgcacaaaaaaggagactctagcatatggagactc 652  Q
    || |||| |||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014677 taagtttatatttgctttgtttgcagcttgaggaaggagaggatttcactgatgtgcttaacccttgcacaaaaaaggagactctagcatatggagactc 38014578  T
Q  653 caatatgcaaaatcttaagcgtggagaagtattacagctggagagaaagggatatttcaggtgtgatgtacccttcgtctggccttcggaacc 745  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  38014577 caatatgcgaaatcttaagcgtggagaagtattgcagctggagagaaagggatattttaggtgtgatgtacccttcgtccggccttcgaaacc 38014485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 198 - 481
Target Start/End: Complemental strand, 38015137 - 38014849
Alignment:
Q  198 acactaccatcactcccttggcccccacctctctatttctatcaatcatatcacccaccaataagccttggctttaatttgagagagagaaatgacactt 297  Q
    ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38015137 acactaccatcactcccttggcccccacct------ttctatcaatcatatcacccaccaataagccttggctttaatttgagagagaaaaatgacactt 38015044  T
Q  298 tggtctaagtggatatttgtttatactgcaaggtgtttatgcaattgtgcatcttaccatatatgttataagaatttgttaacgactattatctgacctt 397  Q
    ||||| | |||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||||||| |||||| ||||| |||||||||    
T  38015043 tggtccacgtggatatttgtttatactgtaaggtgtttatgcaattctgcatc-tcccataaatgttataagaatttattaacggctattgtctgacctt 38014945  T
Q  398 tcatgaaccttccatggatctagttttatagcacc------------atattgtccatcctgatcccattctcttaaaagtgcataccctatgcat 481  Q
    |||||||||||||||||| ||||||||||||||||             || ||||||||||||||||||||||||||||||| |||||||||||||    
T  38014944 tcatgaaccttccatggaactagttttatagcacctaattgtccttattactgtccatcctgatcccattctcttaaaagtggataccctatgcat 38014849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 38015429 - 38015313
Alignment:
Q  36 ttgtgatcatgaaacaattgcacttcattaatattgggtcgaagcgtggaacattatttcttctgcaaagtgtcctatgaaagacacttcttatttgatg 135  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||     
T  38015429 ttgtgctcatgaaagaattgcacttcattaatattgggtcgaagtgtgaaacattagttcttctgcaaagtgtcctatgaaagacacttcttgtttgatc 38015330  T
Q  136 ttgctgtctgtttgtca 152  Q
    |||||||||||||||||    
T  38015329 ttgctgtctgtttgtca 38015313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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