View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_20 (Length: 388)
Name: NF2736_high_20
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 188 - 384
Target Start/End: Original strand, 41101265 - 41101461
Alignment:
| Q |
188 |
tagatagagattaatttctatgcactgacaagtaaaatatttgcatcatacggtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgta |
287 |
Q |
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| T |
41101265 |
tagatagagatcaatttctatgcactgacaagtaaaatatttgcatcatactgtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgta |
41101364 |
T |
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| Q |
288 |
tatgaattaaatccctaaagatatcattaagatttaaatttgaatatttgttagtgtatttataggataaagatatgtttttgaagtataatctagc |
384 |
Q |
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| T |
41101365 |
tatgaattaaatccctaaagatatcattaagatttaaatttgaatatttgttagtgtatttataggataaagatatgtttttgaattataatttagc |
41101461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 41101075 - 41101245
Alignment:
| Q |
17 |
gttgattctattctattctattttatcaatattatcaactcaaaacacacacacagtgcaaatagggaaaatgatgattgatccatttcatgtaatcact |
116 |
Q |
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| T |
41101075 |
gttgattctatactattctattttatcaatattatcaactcaaaacacacacacac-----atagggaaaatgatgattgatccatttcatgtaatcact |
41101169 |
T |
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| Q |
117 |
tgatacaaagttacaaactactgttgttggtgagaatattaagcctaaatatcgtttttaagatttaggtttagat |
192 |
Q |
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| T |
41101170 |
tgatacaaagttacaaactactgttgttggtgagaatattaagcctaaatatcgtttttaagatttaggtttagat |
41101245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 355
Target Start/End: Original strand, 41079693 - 41079819
Alignment:
| Q |
230 |
gcatcatacggtcatttgattagatgcttgtgtaaaaatgtttcacaccgtcaatgtatatgaattaaatccctaaagatatcattaagatttaaatttg |
329 |
Q |
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| T |
41079693 |
gcatcataaagtgatttgtttagatgtatgtgtaaaaacgtttcacatggtcggtgtatataaattaaatccttaaaggtatcattaagatttaaatttg |
41079792 |
T |
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| Q |
330 |
aata-tttgttagtgtatttataggat |
355 |
Q |
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| T |
41079793 |
aatattttgttagagtatttttaggat |
41079819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 41079496 - 41079531
Alignment:
| Q |
83 |
gaaaatgatgattgatccatttcatgtaatcacttg |
118 |
Q |
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| T |
41079496 |
gaaaatgatgattgatacatttcatgtaatcacttg |
41079531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 41079547 - 41079593
Alignment:
| Q |
147 |
tgagaatattaagcctaaatatcgtttttaagatttaggtttagata |
193 |
Q |
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| T |
41079547 |
tgagaatattatgcctagatatcgttttttaggtttaggtttagata |
41079593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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