View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_25 (Length: 337)
Name: NF2736_high_25
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 10010847 - 10011001
Alignment:
| Q |
17 |
cacatggtcggttcaaagattagtttgaacacttcataataattacaagatctaattaagaaactcaaaagaaattggtgatagtgatcactattatcat |
116 |
Q |
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| T |
10010847 |
cacatggtcggttcaaagattagtttgaacacttcataataattacaagatctaattaagaaactcaaaagaaattggtgatagtgatcactattatcat |
10010946 |
T |
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| Q |
117 |
gatcatgttattgagatcatgatgttcatcatttaatctgcgtgataaataaatg |
171 |
Q |
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| T |
10010947 |
gatcatgttattgagatcatgatgttcatcatttaatctgcgtgataaataaatg |
10011001 |
T |
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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 10011071 - 10011162
Alignment:
| Q |
241 |
gatgtgacatttacaaaggcttaatgggagcgctgttatatattgaacacaggaaaatgaaaaaattatcctagtttgtcatttcttctcac |
332 |
Q |
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| T |
10011071 |
gatgtgacatttacaaaggcttaatgggagcgctgttatatattgaacacaggaaaatgaaaaaattatcctagtttgtcatttcttatcac |
10011162 |
T |
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