View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2736_high_27 (Length: 324)
Name: NF2736_high_27
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 275936 - 275836
Alignment:
| Q |
142 |
tatatggtttcaagtgcaataatattttaatagttgattccattttgtattttatttaattaattaaagttatctataaatccaatacacgtcatatgat |
241 |
Q |
| |
|
||||| || |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
275936 |
tatatagtctcaagtgcaatactattttaataattgattccattttgtattttatttaattaattaaagttatctgtaaatctaatacacatcatatgat |
275837 |
T |
|
| Q |
242 |
a |
242 |
Q |
| |
|
| |
|
|
| T |
275836 |
a |
275836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 275443 - 275395
Alignment:
| Q |
269 |
tatgataatagtctgcacatcaatagagttctaaacatttttctctgct |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
275443 |
tatgataatagtccacacatcaatagagttctagacatttttctctgct |
275395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 46662938 - 46662972
Alignment:
| Q |
189 |
tattttatttaattaattaaagttatctataaatc |
223 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46662938 |
tattttatttaattaattaaagttatccataaatc |
46662972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University