View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2736_high_28 (Length: 313)

Name: NF2736_high_28
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2736_high_28
NF2736_high_28
[»] chr6 (28 HSPs)
chr6 (10-299)||(4602460-4602749)
chr6 (54-298)||(4617737-4617981)
chr6 (32-280)||(4592924-4593172)
chr6 (32-280)||(4564404-4564652)
chr6 (27-283)||(4514312-4514568)
chr6 (12-297)||(4506527-4506812)
chr6 (10-283)||(4626619-4626892)
chr6 (12-283)||(4299012-4299283)
chr6 (12-81)||(4259547-4259616)
chr6 (203-280)||(4481554-4481631)
chr6 (203-283)||(3172602-3172682)
chr6 (203-288)||(4517182-4517267)
chr6 (204-283)||(4575170-4575249)
chr6 (27-101)||(4470488-4470562)
chr6 (27-279)||(4266358-4266613)
chr6 (27-278)||(4458280-4458534)
chr6 (207-283)||(4461988-4462064)
chr6 (208-280)||(4489555-4489627)
chr6 (27-91)||(4561189-4561253)
chr6 (27-91)||(4574993-4575057)
chr6 (204-283)||(4470665-4470744)
chr6 (204-283)||(4561366-4561445)
chr6 (141-278)||(4598969-4599106)
chr6 (24-101)||(4622822-4622899)
chr6 (203-297)||(4484016-4484111)
chr6 (27-81)||(4481378-4481432)
chr6 (212-288)||(4568906-4568980)
chr6 (216-273)||(4580915-4580972)
[»] chr3 (1 HSPs)
chr3 (54-298)||(1281829-1282072)
[»] scaffold0199 (1 HSPs)
scaffold0199 (60-281)||(185-406)
[»] chr8 (2 HSPs)
chr8 (60-281)||(1674948-1675169)
chr8 (27-283)||(20863034-20863290)
[»] scaffold0288 (1 HSPs)
scaffold0288 (15-283)||(2909-3177)
[»] chr5 (2 HSPs)
chr5 (12-81)||(24107045-24107114)
chr5 (27-81)||(24103684-24103738)
[»] chr7 (1 HSPs)
chr7 (15-81)||(3087093-3087159)
[»] scaffold0477 (1 HSPs)
scaffold0477 (12-101)||(4062-4151)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 4602460 - 4602749
Alignment:
Q  10 gcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4602460 gcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtc 4602559  T
Q  110 tctattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4602560 tctattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagttt 4602659  T
Q  210 ttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcacagaagttaatat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4602660 ttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcacagaagttaatat 4602749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 54 - 298
Target Start/End: Original strand, 4617737 - 4617981
Alignment:
Q  54 gcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 153  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||| | |||| || |||||||| ||| | ||||||||||| |||||    
T  4617737 gcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaattctaacataa 4617836  T
Q  154 tatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 253  Q
    |||||||||||| ||||||||||||| ||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  4617837 tatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaaacatccatt 4617936  T
Q  254 tgttagataactatcatctgcatatcataagcacagaagttaata 298  Q
    |||||||||||| |||||||||||||||||| ||  |||||||||    
T  4617937 tgttagataactctcatctgcatatcataaggacgaaagttaata 4617981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 4592924 - 4593172
Alignment:
Q  32 agaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatt 131  Q
    |||||| ||||||||  | || ||||| |||||||||||||||||||||||| |||||||||||| |||| |||||| | ||| |  | |||| || |      
T  4592924 agaaggaaacatagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccaca 4593023  T
Q  132 tcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatcta 231  Q
    ||||  |  || | || |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  4593024 tcaattacaaagtttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatcta 4593123  T
Q  232 cttttgtttccaaacatccatttgttagataactatcatctgcatatca 280  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  4593124 ctttagtttccaaatatccatttgttagataactctcatctgcatatca 4593172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 4564404 - 4564652
Alignment:
Q  32 agaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatt 131  Q
    |||||| ||||||||  | || ||||| ||||||||||||| |||||||| | |||||||||||| |||  ||||||||| |  || | |||| ||        
T  4564404 agaaggaaacatagaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgca 4564503  T
Q  132 tcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatcta 231  Q
    ||||  |  || |||| |||||||||||||||||||||||||||||||  |||||  || || || ||||||||||||||||||||||||||||||||||    
T  4564504 tcaattacaaagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatcta 4564603  T
Q  232 cttttgtttccaaacatccatttgttagataactatcatctgcatatca 280  Q
    | || ||||||||| |||||||||||||||| || | ||||||||||||    
T  4564604 cattagtttccaaatatccatttgttagatagctctgatctgcatatca 4564652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 4514568 - 4514312
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg 126  Q
    |||| |||||||| ||||||||| || |||||||| |||||||||||||| |||||  ||||||| |||| ||||  |||  |||||| || |||||||     
T  4514568 tatagagaagggagcatagaataaagagcattcataacatcactctcaagatcattagaagtatttaaaaaaatagcagaagctctatgaagtctatcta 4514469  T
Q  127 caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca 226  Q
    | |||||||| |  ||||||| ||| | |||||| | |||||||||||  ||| | ||| ||| ||| ||||  | |||||||  |||||||||||||||    
T  4514468 ccatttcaaagataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagtttcgcaaacctggaatcca 4514369  T
Q  227 atctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
     || ||||| || |||||| |||||||||| | |||||| |||||||||||||||||    
T  4514368 gtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataa 4514312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 4506527 - 4506812
Alignment:
Q  12 aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctc 111  Q
    ||||| || ||||| |||| |||||| ||||||  ||  || |||||||  |||| |||||||||||||||  ||||||| | || ||||  |||| |||    
T  4506527 aaagggccaatagtgtatagagaaggaaacataatatcaagagcattcagaacattactctcaagttcattagaagtattgagaacaatagaagaggctc 4506626  T
Q  112 tattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttttt 211  Q
    ||| |||| | |||||   ||||| ||  ||||||| | | | ||| || |||||||||||||| ||| | ||| |||  |||||||  | ||||||| |    
T  4506627 tatgaaatgtttctgctgcttcaataataaattctatcctcaaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttct 4506726  T
Q  212 caaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcacagaagttaat 297  Q
    ||||||||||||||| ||||| || || |||||| ||||||||||||||||||| |||||||||||||||||  ||| ||||||||    
T  4506727 caaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagttaat 4506812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 4626619 - 4626892
Alignment:
Q  10 gcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtc 109  Q
    |||||||||| || ||||||| |||| ||||| ||||||| || |||||||||||||||| ||||||||||| |||||| || |||| ||||   ||  |    
T  4626619 gcaaaggtccaatggtatatacagaaaggaacgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgc 4626718  T
Q  110 tctattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttt 209  Q
    ||| | ||||||||||||   |||||  |  ||||||||||| | |||||| |||| ||||||||| ||| ||| ||||| ||| |||| |||||||||     
T  4626719 tctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttc 4626818  T
Q  210 ttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    | ||| || ||||| ||||||| ||| || || ||| |||||||||| | |||| | |||||||| | ||||||    
T  4626819 tgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataa 4626892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 4299283 - 4299012
Alignment:
Q  12 aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctc 111  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||||| |||| ||||  |||  ||     
T  4299283 aaaggtccaatagtatataaagaagggaacatagaatagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctt 4299184  T
Q  112 tattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttttt 211  Q
    | | ||||||||||||   |||||     ||||||||||| | ||||||||||| |||  |||| ||| |||||   |  |||||||| |||||||| |     
T  4299183 tgtgaaatctatctgccgcttcaatggcaaattctaccatgacatcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctg 4299084  T
Q  212 caaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    ||| |||||||| || |||| |||  | || ||| |||| ||||| | |||||| |||||||| | ||||||    
T  4299083 caatcctggaatacagtctagtttgatgtctaaatatccgtttgtcaaataactctcatctgcttgtcataa 4299012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 4259616 - 4259547
Alignment:
Q  12 aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat 81  Q
    |||||||| |||| |||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  4259616 aaaggtccaatagcatataaagaagggaacatagaatagagcacattcattacatcactctcaagttcat 4259547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 4481554 - 4481631
Alignment:
Q  203 aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatca 280  Q
    |||||||||||||||||||||||| |||||| |||  |||||| |||||| ||||| |||||| ||||||||||||||    
T  4481554 aaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 3172602 - 3172682
Alignment:
Q  203 aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    |||||||||||||||||||||||| || ||| | || |||||| |||||||||||  |||||| |||||||||||||||||    
T  3172602 aaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatcataa 3172682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 4517182 - 4517267
Alignment:
Q  203 aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcaca 288  Q
    |||||||  ||||||||||||||| || ||||| || |||||| |||||||||| | |||||| ||||||||||||||||| ||||    
T  4517182 aaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataatcaca 4517267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 4575170 - 4575249
Alignment:
Q  204 aagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    ||||||||||||||||| ||||| || | |||||| |||||| || |||||||||||| ||| |||||||||| ||||||    
T  4575170 aagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataa 4575249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 4470488 - 4470562
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaata 101  Q
    |||| ||||||||| |||||||| ||| ||||||| |||||||| |||||||||||  |||||||||||| ||||    
T  4470488 tatagagaagggaatatagaatagagttcattcataacatcactttcaagttcattagaagtattcaaaacaata 4470562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 279
Target Start/End: Complemental strand, 4266613 - 4266358
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg 126  Q
    |||| ||||||||||||||| || || |||||||| |||||||||||||||||||   ||||||| | || ||||  |||| |||  | | ||||||| |    
T  4266613 tatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccg 4266514  T
Q  127 caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca 226  Q
    | | |||   ||  |||| || ||| | |||||| ||||||||  ||||  || | ||| ||| ||| ||||||| |||||||| ||||||| |||||||    
T  4266513 ccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaaccttgaatcca 4266414  T
Q  227 ---atctacttttgtttccaaacatccatttgttagataactatcatctgcatatc 279  Q
       | | |||||  | || ||| ||||||||||||||||||| |||||||||||||    
T  4266413 gtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 4458280 - 4458534
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg 126  Q
    |||| ||||||||||||||| || || | |||||| |||||||||||||||||||   ||||||| | || ||||  |||| |||||| | |||||||||    
T  4458280 tatatagaagggaacatagagtagagagtattcataacatcactctcaagttcataagaagtattgataacaatagaagaggctctatgacatctatctg 4458379  T
Q  127 caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca 226  Q
    | | |||    |  |||| || ||| | || ||| ||||||||  || | ||| | ||| ||| ||| ||||||| |||||||| |||||||| ||||||    
T  4458380 ccacttcggttataaattttatcatcaaattattaggatctgtaatctttataaaatcaggaaggtccttcaacctaaagttttgcaaacctgaaatcca 4458479  T
Q  227 ---atctacttttgtttccaaacatccatttgttagataactatcatctgcatat 278  Q
       | | |||||| | |||||| |||||||||||| |||||| || |||||||||    
T  4458480 gtcaccgacttttttgtccaaatatccatttgttaaataactctcttctgcatat 4458534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 4461988 - 4462064
Alignment:
Q  207 tttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    |||||||||||||||||||| || ||||  || || ||| |||||| |||||||||| | |||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatcataa 4462064  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  208 ttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatca 280  Q
    ||||||||||||||||||| || ||||| || ||||||  ||||| |||||||| ||| ||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

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Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 4561189 - 4561253
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtatt 91  Q
    |||| |||||||||||||||||| |  |||||||| ||||||||||||||||||||  |||||||    
T  4561189 tatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtatt 4561253  T

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Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 4574993 - 4575057
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtatt 91  Q
    |||| |||||||||||||||||| |  |||||||| ||||||||||||||||||||  |||||||    
T  4574993 tatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtatt 4575057  T

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Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 4470665 - 4470744
Alignment:
Q  204 aagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    ||||||||||||||||||||||| || ||||   | || ||| |||||| | |||||||||| |||||||||||||||||    
T  4470665 aagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatcataa 4470744  T

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Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 4561366 - 4561445
Alignment:
Q  204 aagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    ||||||||||||||||| ||||| || ||||| || |||| | || |||||||||||| ||| |||||||||| ||||||    
T  4561366 aagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcatgtcataa 4561445  T

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Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 278
Target Start/End: Original strand, 4598969 - 4599106
Alignment:
Q  141 aattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgttt 240  Q
    |||||||| |||  || ||||||||||||| |||  ||| | ||| |||  |||||||  |||||||||| ||  || ||||| ||||||||||| ||||    
T  4598969 aattctactatagaataatttggatctgttatccctataaaatcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctactttagttt 4599068  T
Q  241 ccaaacatccatttgttagataactatcatctgcatat 278  Q
    ||||| |||| ||||| |||  ||||||||||| ||||    
T  4599069 ccaaatatccgtttgtcagacgactatcatctgtatat 4599106  T

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Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 4622822 - 4622899
Alignment:
Q  24 gtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaata 101  Q
    ||||| ||||| |||||||| ||||| || ||||||||  ||||| ||||||||||||| |||||||| |||| ||||    
T  4622822 gtatacaaagatgggaacattgaatagagcgcattcatcgcatcagtctcaagttcattataagtattaaaaataata 4622899  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 4484111 - 4484016
Alignment:
Q  203 aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttg-ttagataactatcatctgcatatcataagcacagaagttaat 297  Q
    ||||||||||||| |||||| ||| |||||||  || |||||| || |||||| |||||||||| | || ||||||||||||  ||| ||||||||    
T  4484111 aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatcataattacaaaagttaat 4484016  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 4481378 - 4481432
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat 81  Q
    |||| ||||||||| |||||||| || | |||||| |||||||||||||||||||    
T  4481378 tatagagaagggaatatagaatagagagaattcataacatcactctcaagttcat 4481432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 4568906 - 4568980
Alignment:
Q  212 caaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcaca 288  Q
    ||||||||||||||| || ||||| ||  ||||| |||||||||| |||||||  |||||||||||| |||| ||||    
T  4568906 caaacctggaatccagtcaactttagtgaccaaatatccatttgtcagataac--tcatctgcatattataatcaca 4568980  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 4580915 - 4580972
Alignment:
Q  216 cctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctg 273  Q
    |||||||| ||||||||||| || |||||| |||| ||||| |||||||| |||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctg 4580972  T

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Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 54 - 298
Target Start/End: Original strand, 1281829 - 1282072
Alignment:
Q  54 gcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 153  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| |||||    
T  1281829 gcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaagaattctaacataa 1281928  T
Q  154 tatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 253  Q
    |||| ||| ||||| ||||||||||| |||||| ||| || |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  1281929 tatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttccaaatatccatt 1282028  T
Q  254 tgttagataactatcatctgcatatcataagcacagaagttaata 298  Q
    |||||||||||| ||||||||| |||||||| ||| |||||||||    
T  1282029 tgttagataactctcatctgca-atcataagtacaaaagttaata 1282072  T

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Target: scaffold0199 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 281
Target Start/End: Original strand, 185 - 406
Alignment:
Q  60 attacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataatatcat 159  Q
    |||||||||||||||||||||||| |||||||||||| |||  |||||||||| | || | |||| || |  ||||  || || |||| |||||||||||    
T  185 attacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatcat 284  T
Q  160 ttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttag 259  Q
    ||||||| ||||| |||||| |||||| ||  || |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||    
T  285 ttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttag 384  T
Q  260 ataactatcatctgcatatcat 281  Q
    ||  || |||||||||||||||    
T  385 atgtctctcatctgcatatcat 406  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 281
Target Start/End: Original strand, 1674948 - 1675169
Alignment:
Q  60 attacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataatatcat 159  Q
    |||||||||||||||||||||||| |||||||||||| |||  |||||||||| | || | |||| || |  ||||  || || |||| |||||||||||    
T  1674948 attacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatcat 1675047  T
Q  160 ttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttag 259  Q
    ||||||| ||||| |||||| |||||| ||  || |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||    
T  1675048 ttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttag 1675147  T
Q  260 ataactatcatctgcatatcat 281  Q
    ||  || |||||||||||||||    
T  1675148 atgtctctcatctgcatatcat 1675169  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 20863290 - 20863034
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg 126  Q
    |||| |||||||||||||||||| ||  ||||||| |||||||||||||| |||||| ||||||| |||| ||||  |||| |||| | ||||||||||     
T  20863290 tatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatcta 20863191  T
Q  127 caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca 226  Q
    | | |||||  |  ||||||| ||    |||||| |||| ||||||||| ||  |   ||||| ||| ||||  |  || |||  ||||||||||||||     
T  20863190 ctacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacctggaatccg 20863091  T
Q  227 atctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    ||| ||||| || |||||| ||||||||||||||||||| ||||||| |||||||||    
T  20863090 atcaactttagtctccaaatatccatttgttagataactctcatctgtatatcataa 20863034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 3177 - 2909
Alignment:
Q  15 ggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctat 114  Q
    ||||||||| | ||||| || ||||||||||| |  || ||||||| ||||||||||||||||||||| ||||| || |||| |||   |||  |||| |    
T  3177 ggtccgatactgtataatgatgggaacatagagtggagcgcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgt 3078  T
Q  115 taaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaa 214  Q
     ||||  ||||||   |||||  || ||||||||||||| ||||||  ||||| |||| || ||| ||||| ||| ||| || |  |||||||||||||     
T  3077 gaaattgatctgctgcttcaatgaaaaattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtcctttagtcgaaagtttttcat 2978  T
Q  215 acctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 283  Q
    ||| ||||| |||||||||||  | |||||| ||||| |||| | ||||||||||||||| | ||||||    
T  2977 acccggaatacaatctactttgttgtccaaatatccacttgtcaaataactatcatctgcttgtcataa 2909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 24107045 - 24107114
Alignment:
Q  12 aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat 81  Q
    |||||||| |||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||    
T  24107045 aaaggtccaatagtatataaaaaagggaacatagaatagagcgtattcattacatcactctcaagttcat 24107114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 24103684 - 24103738
Alignment:
Q  27 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat 81  Q
    |||| ||||||||||||||| || || |||||||| |||||||||||||||||||    
T  24103684 tatatagaagggaacatagagtagagagcattcataacatcactctcaagttcat 24103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 3087093 - 3087159
Alignment:
Q  15 ggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat 81  Q
    ||||| || |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  3087093 ggtccaatggtatataatgaagggaacacagaatatagcgcattcattacatcactctcaagttcat 3087159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 4151 - 4062
Alignment:
Q  12 aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaata 101  Q
    |||||||| || |||||||||||||||||||||||||| || ||||||| |||| | ||||||||||||| |||||| || |||| ||||    
T  4151 aaaggtccaatggtatataaagaagggaacatagaatagagagcattcaatacaccgctctcaagttcatcgtaagtgttgaaaacaata 4062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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