View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_29 (Length: 309)
Name: NF2736_high_29
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 3598503 - 3598795
Alignment:
| Q |
1 |
ctctaaatcttctagcgtcgcatccatagccttgctgannnnnnnnnnnnnnnncagtttccgtgacagtgtctttctcaacataaccagtaacatctaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598503 |
ctctaaatcttctagcgtcgcatccatagccttgctgatttttttcatttttttcagtttccgtgacagtgtctttctcaacataaccagtaacatctaa |
3598602 |
T |
|
| Q |
101 |
aaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatctattcaaaagagaagagtaac------tacaatcctcctta |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
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| T |
3598603 |
aaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataaactattcaaaagagaagagtaaccaagtatccaatcctcctta |
3598702 |
T |
|
| Q |
195 |
gagcatcctaaaatctctagaaaaggattaataatttaggacaataattattaaggccttccgcaatttgtgtttctaaagctgcagcaagcc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
3598703 |
gagcatcctaaaatctctagaaaaggattaataatttaggacaataattattaaggccatctgcaatttgtgtttctaaagctgcagcaagcc |
3598795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 4356464 - 4356335
Alignment:
| Q |
55 |
cagtttccgtgacagtgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaa |
152 |
Q |
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|||||||| ||||||||||||||||||||| |||| |||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||| |||| |
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| T |
4356464 |
cagtttccttgacagtgtctttctcaacatgaccaataacatcttaaaatatgatttcattttccaagtatatatgagaaatgaactaacaactcctgaa |
4356365 |
T |
|
| Q |
153 |
aataatctattcaaaagagaagagtaacta |
182 |
Q |
| |
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||||| | |||||||||||||||||||||| |
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| T |
4356364 |
aataaacaattcaaaagagaagagtaacta |
4356335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 45221399 - 45221519
Alignment:
| Q |
64 |
tgacagtgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatcta |
161 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| | | |
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| T |
45221399 |
tgacagtgtctttctcaacatgaccaataacatctaaaaatatgatttcattttccaagtatatatgagaaatgaactaaaaactcatgaaaataaacaa |
45221498 |
T |
|
| Q |
162 |
ttcaaaagagaagagtaacta |
182 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
45221499 |
ttcaaaagagaagagtaacta |
45221519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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