View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_30 (Length: 298)
Name: NF2736_high_30
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 26593594 - 26593882
Alignment:
| Q |
1 |
tcaaagaatttgagcattggtgctatcacaccgtctcttttgttggattggaatgtcccgcttgacgttggtaatgttaattgtaagacatccatggcta |
100 |
Q |
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| T |
26593594 |
tcaaagaatttgagcattggtgctatcacaccgtctcttttgttggattggaatgtcccgcttgacgttggtaatgttaattgtaagacatccatggcta |
26593693 |
T |
|
| Q |
101 |
atggggtgtcacttttaatgcctctgatgttctgtgatttgagtgctcttttgatgcttttcattactgggccaagatcatgccacattttg-tgatctt |
199 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26593694 |
atggggtgtcacttttgatgcctctgatgttctgtgatttgagtgctcttttgatgcttttcattactgggccaagatcatgccacattttgttgatctt |
26593793 |
T |
|
| Q |
200 |
gttctgaattgtacaatagtacttcgttttcctacaagtaagaagtgaattaggatttttgggtgagtatttcccctgcttataaatatt |
289 |
Q |
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| T |
26593794 |
gttctgaattgtactatagtacttcg-tttcctacaagtaagaagtgaattaggatttttgggtgaggattgcccttgcttataaatatt |
26593882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 34750253 - 34750489
Alignment:
| Q |
4 |
aagaatttgagcattggtgctatcacaccgtctcttttgttggattggaatgtcccgcttgacgttggtaatgttaattgtaagacatccatggctaatg |
103 |
Q |
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|||||||||||||||||||| ||||||| ||||||| ||| |||| ||||||| || ||||||| ||| || ||| ||| |||||||||||||||||||| |
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| T |
34750253 |
aagaatttgagcattggtgccatcacactgtctcttatgtcggatcggaatgttccacttgacggtgggaaggttgattctaagacatccatggctaatg |
34750352 |
T |
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| Q |
104 |
gggtgtcacttttaatgcctctgatgttctgtgatttgagtgctcttttgatgcttttcattactgggccaagatcatgccacattttgtgatcttgttc |
203 |
Q |
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||||| || |||| |||||||| || ||||| || ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
34750353 |
gggtgccaattttgatgcctcttatattctgagaattgagtgctctcttgatgcttctcattgctgggacaagatcatgccacattttgtgaccttgttc |
34750452 |
T |
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| Q |
204 |
tgaattgtacaatagtacttcgttttcctacaagtaag |
241 |
Q |
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||||||||| ||| ||||| ||||||||||||||| |
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| T |
34750453 |
tgaattgtagcttagcacttc-atttcctacaagtaag |
34750489 |
T |
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