View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_36 (Length: 273)
Name: NF2736_high_36
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 48236735 - 48236495
Alignment:
| Q |
15 |
gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg |
114 |
Q |
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| T |
48236735 |
gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg |
48236636 |
T |
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| Q |
115 |
aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa |
214 |
Q |
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| T |
48236635 |
aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa |
48236536 |
T |
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| Q |
215 |
actcttaaatcctgaagctgctcaaggcaggaagcaattca |
255 |
Q |
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| T |
48236535 |
actcttaaatcctgaagctgctcaaggcaggaagcaattca |
48236495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
| Q |
140 |
atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca |
196 |
Q |
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| T |
3685864 |
atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca |
3685920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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