View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2736_high_37 (Length: 267)
Name: NF2736_high_37
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 3492873 - 3492639
Alignment:
| Q |
19 |
attctgtcaaaggagactaatgtgttggactaatctactagtagtgcctaacaacaaatctatgaaatagaaggtgctaagaaaaccatagttctcctat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3492873 |
attctgtcaaaggagactaatgtgttggactaatctactagtagtgcctaacaacaaatctacgaaatagaaggtgctaagaaaaccatagttctcctat |
3492774 |
T |
|
| Q |
119 |
agggggacacaaatgcatcactagaactttggctgaaataagatctcaattttagtg-ccatcaatgaagaaatatatccaaaaatttgtccaccattat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3492773 |
agggggacacaaatgcatcactagaactttggctgaaataagatctcaattttagtgcccatcaatgaagaaatatatccaaaaatttgtccaccattat |
3492674 |
T |
|
| Q |
218 |
gcaacatgtcagcagtcaagactatcatccatact |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3492673 |
gcaacatgtcagcagtcaagactatcatccatact |
3492639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 3507077 - 3506984
Alignment:
| Q |
131 |
atgcatcactagaactttggctgaaataagatctcaattttagtg-ccatcaatgaagaaatatatccaaaaatttgtccaccattatgcaaca |
223 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3507077 |
atgcatcactacaactttggctgaaataagatctcaattttagtggccatcaatgaagaaatatatccaaaaatttgtccaccattatgcaaca |
3506984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 3507166 - 3507077
Alignment:
| Q |
19 |
attctgtcaaaggagactaatgtgttggactaatctactagtagtgcctaacaacaaatctatgaaatagaaggtgctaagaaaaccata |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
3507166 |
attctgtcaaaggagactaatgtattggactaatatactagtagtgcctaacaacaaatctacgaaaaagattgtgctaagaaaaccata |
3507077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University