View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2736_high_38 (Length: 260)
Name: NF2736_high_38
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 26594059 - 26594311
Alignment:
| Q |
1 |
aaaaggttggccttgaaagagatgcataatacactgtttgagttggaaatgagctcatcacgaattccagtttccacaatgctccctccttcaacaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26594059 |
aaaaggttggccttgaaagagatgcataatacactgtttgagttggaaatgagctcatcacgaattccagtttccacaatgctccctccttcaacaatag |
26594158 |
T |
|
| Q |
101 |
ctatcgaagttgttctaccaatcatgacactataacaagaggttcttatatacttttctcaatctctgcatccaaagcactagttgcttcgtctaataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
26594159 |
ctatcgaagttgttctaccaatcatgacactataacaagaggttcttatatacttttctcaaactctgcattcaaagcactaagtgcttcgtctaataaa |
26594258 |
T |
|
| Q |
201 |
aggactgatggatttttaactatagcatgatatcttattgcaatcctatgctt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26594259 |
aggactgatggatttttaactatagcatgatatcttattgcaatcctttgctt |
26594311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 27727564 - 27727447
Alignment:
| Q |
108 |
agttgttctaccaatcatgacactataacaagaggttcttatatacttttctcaatctctgcatccaaagcactagttgcttcgtctaataaaaggactg |
207 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||||| || |||||||||| ||| ||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
27727564 |
agttgttctaccaatcatgacatgat--caagagcttcttgtacacttttctcagactcggcatccaaagcactagttgcttcatctaataaaaggattg |
27727467 |
T |
|
| Q |
208 |
atggatttttaactatagca |
227 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27727466 |
atggatttttaactatagca |
27727447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 27625114 - 27625154
Alignment:
| Q |
65 |
ttccagtttccacaatgctccctccttcaacaatagctatc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27625114 |
ttccagtttccacaatgctccctccttcaacaatagctatc |
27625154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 27727671 - 27727609
Alignment:
| Q |
43 |
ttggaaatgagctcatcacgaattccagtttccacaatgctccctccttcaacaatagctatc |
105 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27727671 |
ttggaaatgagctcctcgtgatttccagtttccacaacgctccctccttcaacaacagctatc |
27727609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 12520061 - 12520015
Alignment:
| Q |
168 |
gcatccaaagcactagttgcttcgtctaataaaaggactgatggatt |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
12520061 |
gcatccaaagcactagttgcttcatctaataaaaggatcgatggatt |
12520015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University