View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_40 (Length: 250)
Name: NF2736_high_40
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11689095 - 11689335
Alignment:
| Q |
1 |
ccatggtccgtctccaacaccaaccaatatgattgaaagaggaggcttactgttataaggaaaacatataagatatgatatttcaaaaaatatatattct |
100 |
Q |
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| T |
11689095 |
ccatggtccatctccaacaccaaccaatataattgaaagaggaagcttactgttataaataaaacatataagatatgatgtttcaaaaaagatagattct |
11689194 |
T |
|
| Q |
101 |
gaagcaaaaactacatcagagtcacctagcccggacaatggcgtccatagtcttctgttcctgtggacttagctttccatattcagtgtcaacacttctt |
200 |
Q |
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| T |
11689195 |
gaagcaaaaactacatcagagtcacctagcccggacaatggcatccatagtcttctgttcctgtggacttagttttccatactcagtgtcaacacttctt |
11689294 |
T |
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| Q |
201 |
gttacctgcatcgaccgttgttgatatcgggtgagaataat |
241 |
Q |
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| T |
11689295 |
gttacctacatcgaccattgtagatgtcgagtgagtataat |
11689335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 30955150 - 30955112
Alignment:
| Q |
5 |
ggtccgtctccaacaccaaccaatatgattgaaagagga |
43 |
Q |
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| T |
30955150 |
ggtccatctccaacaccaaccaatatgattgaaagagga |
30955112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 30958988 - 30958950
Alignment:
| Q |
5 |
ggtccgtctccaacaccaaccaatatgattgaaagagga |
43 |
Q |
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| T |
30958988 |
ggtccatctccaacaccaaccaatatgattgatagagga |
30958950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 7474039 - 7473963
Alignment:
| Q |
134 |
gacaatggcgtccatagtcttctgttcctgtggacttagctttccatattcagtgtcaacacttcttgttacctgca |
210 |
Q |
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| T |
7474039 |
gacaatggcatccacagtcttctgctcctgtggactgagccttccatgttcagtgtcaatacttcttgttacctgca |
7473963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 7474170 - 7474132
Alignment:
| Q |
5 |
ggtccgtctccaacaccaaccaatatgattgaaagagga |
43 |
Q |
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| T |
7474170 |
ggtccatctccaacaccaaccaatatgatcgaaagagga |
7474132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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