View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_41 (Length: 248)
Name: NF2736_high_41
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 12035004 - 12034787
Alignment:
| Q |
17 |
atatttatagtaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgaaaaacgcggaattttgaagaatcga |
116 |
Q |
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| T |
12035004 |
atatttatagtaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgaaaaacgcggaattttgaagaatcga |
12034905 |
T |
|
| Q |
117 |
tgtgaattttgatgaatcgttttgttgtagatggaaagaaagtgagggttttgtgaaatggtgcgatggatttggcggggaattcaattttgcggtatat |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
12034904 |
tgtgaattttgatgaatggttttgttgtagatggaaagaaagtgagggttttgtaaaatggtgtgatggatttggcggggaattgaattttgcggtatat |
12034805 |
T |
|
| Q |
217 |
atataggctttcgcgccc |
234 |
Q |
| |
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|||||||||||||||||| |
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| T |
12034804 |
atataggctttcgcgccc |
12034787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 24284776 - 24284955
Alignment:
| Q |
18 |
tatttatagtaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgaaaaacgcggaattttgaagaatcgat |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
24284776 |
tatttatattaccaggatctgaagaattgagaagagaagcggaacccattagttgaatgattttccttatatgcaaaacgcgaaattttgacgaatcgat |
24284875 |
T |
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| Q |
118 |
gtgaattttgatgaatcgttttgttgtagat-ggaaagaaagtgagggttttgtgaaatggtgcgatggatttggcgggg |
196 |
Q |
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| T |
24284876 |
gtgaattttgatgaatcgttatgttgtagatgggaaagaaagtgagggttttgtgaaatggtgtaatgcatttggcgggg |
24284955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 8065758 - 8065916
Alignment:
| Q |
17 |
atatttatagtaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgaaaaacgcggaattttgaagaatcga |
116 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
8065758 |
atatttatattaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttcctta-------------gagttttgttgaatcga |
8065844 |
T |
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| Q |
117 |
tgtgaattttgatgaatcg--ttttgttgtagatggaaagaaagtgagggttttgtgaaatggtgcgatgga |
186 |
Q |
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| T |
8065845 |
ggtgaattttgatgaatcgttttttgttgtagatggaaagaaagtgagggttttgtgaaattgtgtgatgga |
8065916 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 20167104 - 20167222
Alignment:
| Q |
17 |
atatttatagtaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgaaaaacgcggaattttgaagaatcga |
116 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
20167104 |
atatatatattaccaggatctgaagaattgagaagagaagcggaacccatgacttgaatgattttcctaatatgcaaaacgcggaattttgatgaatcga |
20167203 |
T |
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| Q |
117 |
tgtgaattttgatgaatcg |
135 |
Q |
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| T |
20167204 |
attgaattttgatgaatcg |
20167222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 20167225 - 20167317
Alignment:
| Q |
118 |
gtgaattttgatgaatcgttttgttgtagatggaaagaaagtgagggttttgtgaaatg--gtgcgatggatttggcggggaattcaattttg |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||| ||||||||||| ||||||| || ||||| |
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| T |
20167225 |
gtgaattttgatgaatcgttttgttgcagatggaaagaaagtgaggattttgtgaaagggtgtgtgatggatttggaggggaatgcagttttg |
20167317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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