View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2736_high_48 (Length: 229)

Name: NF2736_high_48
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2736_high_48
NF2736_high_48
[»] chr1 (44 HSPs)
chr1 (27-214)||(38674544-38674729)
chr1 (27-124)||(29371370-29371467)
chr1 (27-118)||(34062217-34062308)
chr1 (27-120)||(8337890-8337983)
chr1 (27-120)||(46333985-46334078)
chr1 (27-124)||(15220813-15220910)
chr1 (27-126)||(47303395-47303494)
chr1 (27-120)||(49444952-49445043)
chr1 (27-87)||(1091583-1091643)
chr1 (27-86)||(4609036-4609095)
chr1 (70-125)||(48823886-48823941)
chr1 (27-97)||(29179636-29179706)
chr1 (27-97)||(37155075-37155145)
chr1 (27-103)||(741541-741617)
chr1 (5-97)||(17127581-17127673)
chr1 (70-125)||(46333947-46334002)
chr1 (27-97)||(32540787-32540857)
chr1 (27-97)||(48993956-48994026)
chr1 (27-96)||(5995399-5995468)
chr1 (73-125)||(28928780-28928832)
chr1 (41-120)||(36290460-36290548)
chr1 (27-87)||(45728326-45728386)
chr1 (41-103)||(5694942-5695004)
chr1 (67-125)||(34062288-34062346)
chr1 (27-96)||(9157340-9157409)
chr1 (27-120)||(33219579-33219672)
chr1 (32-97)||(44706828-44706893)
chr1 (71-121)||(37155129-37155180)
chr1 (70-120)||(4609078-4609128)
chr1 (70-120)||(38674511-38674561)
chr1 (46-77)||(7788306-7788337)
chr1 (50-97)||(21630071-21630118)
chr1 (67-114)||(47303474-47303521)
chr1 (42-97)||(48498444-48498499)
chr1 (90-125)||(48993909-48993944)
chr1 (90-125)||(49444905-49444940)
chr1 (70-124)||(1819491-1819545)
chr1 (27-65)||(1819528-1819566)
chr1 (67-125)||(8337853-8337910)
chr1 (27-77)||(28928818-28928868)
chr1 (27-97)||(48604986-48605056)
chr1 (72-125)||(4579170-4579222)
chr1 (77-130)||(48498504-48498556)
chr1 (70-114)||(19711192-19711236)
[»] scaffold0047 (2 HSPs)
scaffold0047 (27-120)||(63763-63856)
scaffold0047 (70-116)||(63839-63885)
[»] chr2 (20 HSPs)
chr2 (5-125)||(14229370-14229489)
chr2 (33-120)||(29925615-29925702)
chr2 (27-120)||(6217263-6217356)
chr2 (27-125)||(2828585-2828683)
chr2 (35-121)||(2893968-2894054)
chr2 (27-120)||(38933593-38933686)
chr2 (6-120)||(37961712-37961826)
chr2 (27-94)||(15011312-15011379)
chr2 (41-96)||(14470645-14470700)
chr2 (27-97)||(6721980-6722050)
chr2 (70-120)||(15011362-15011412)
chr2 (27-97)||(16514453-16514523)
chr2 (32-97)||(29508735-29508800)
chr2 (71-124)||(14464557-14464610)
chr2 (27-87)||(37762040-37762100)
chr2 (90-125)||(38933698-38933733)
chr2 (70-107)||(2828666-2828703)
chr2 (27-96)||(24115950-24116019)
chr2 (70-118)||(2894045-2894093)
chr2 (90-130)||(16514535-16514575)
[»] chr5 (21 HSPs)
chr5 (6-125)||(28818918-28819037)
chr5 (27-120)||(3899845-3899938)
chr5 (27-120)||(16971150-16971243)
chr5 (27-123)||(38134412-38134508)
chr5 (6-97)||(19655187-19655278)
chr5 (27-125)||(16802445-16802543)
chr5 (27-125)||(26662400-26662498)
chr5 (27-125)||(26933995-26934093)
chr5 (4-113)||(2093953-2094062)
chr5 (4-97)||(29699396-29699489)
chr5 (27-97)||(16439167-16439237)
chr5 (27-97)||(12913832-12913902)
chr5 (27-97)||(3180099-3180169)
chr5 (4-97)||(291126-291219)
chr5 (27-120)||(2953204-2953289)
chr5 (25-84)||(2935867-2935926)
chr5 (67-125)||(3180061-3180119)
chr5 (27-97)||(19598361-19598430)
chr5 (90-125)||(2953301-2953336)
chr5 (90-125)||(16971255-16971290)
chr5 (70-114)||(16439220-16439264)
[»] chr4 (33 HSPs)
chr4 (27-121)||(52028554-52028648)
chr4 (4-120)||(42375016-42375132)
chr4 (27-113)||(40789192-40789278)
chr4 (132-214)||(52457693-52457775)
chr4 (14-121)||(55090022-55090129)
chr4 (27-120)||(47404624-47404717)
chr4 (4-120)||(53954616-53954732)
chr4 (7-97)||(47762637-47762727)
chr4 (6-97)||(6271731-6271822)
chr4 (27-120)||(31430500-31430590)
chr4 (70-125)||(50384106-50384161)
chr4 (27-97)||(23444308-23444378)
chr4 (27-97)||(47661871-47661941)
chr4 (27-97)||(51265474-51265544)
chr4 (64-125)||(31430462-31430523)
chr4 (33-118)||(38714831-38714916)
chr4 (27-124)||(24006109-24006198)
chr4 (70-125)||(47404586-47404641)
chr4 (27-130)||(26186055-26186165)
chr4 (41-97)||(30861827-30861883)
chr4 (70-125)||(24006071-24006126)
chr4 (70-125)||(40789261-40789316)
chr4 (27-77)||(45591449-45591499)
chr4 (28-97)||(35682195-35682264)
chr4 (70-121)||(55090001-55090052)
chr4 (27-77)||(50384144-50384194)
chr4 (67-124)||(28693925-28693982)
chr4 (90-125)||(42375121-42375156)
chr4 (70-125)||(55089878-55089933)
chr4 (27-77)||(25818412-25818462)
chr4 (15-97)||(31532716-31532798)
chr4 (70-112)||(52028631-52028673)
chr4 (72-125)||(9712847-9712900)
[»] chr6 (11 HSPs)
chr6 (4-124)||(24618617-24618737)
chr6 (46-125)||(31654306-31654385)
chr6 (27-120)||(12343106-12343199)
chr6 (27-115)||(10521888-10521976)
chr6 (27-125)||(2315343-2315441)
chr6 (64-124)||(10521851-10521911)
chr6 (28-97)||(17750931-17751000)
chr6 (6-81)||(13043502-13043577)
chr6 (27-97)||(551204-551274)
chr6 (33-97)||(24587490-24587554)
chr6 (67-121)||(551170-551224)
[»] chr3 (26 HSPs)
chr3 (28-124)||(47677295-47677391)
chr3 (27-124)||(29031753-29031850)
chr3 (27-108)||(1801485-1801566)
chr3 (27-125)||(30476513-30476611)
chr3 (27-97)||(43139748-43139818)
chr3 (67-125)||(49414502-49414560)
chr3 (59-120)||(1801566-1801627)
chr3 (27-87)||(33689215-33689275)
chr3 (70-125)||(33689258-33689313)
chr3 (46-113)||(39385746-39385813)
chr3 (27-94)||(47492086-47492153)
chr3 (27-97)||(41752993-41753063)
chr3 (7-97)||(51046092-51046182)
chr3 (42-97)||(50524731-50524786)
chr3 (28-97)||(30734442-30734511)
chr3 (27-97)||(18321680-18321750)
chr3 (75-125)||(49418692-49418742)
chr3 (27-97)||(50550004-50550074)
chr3 (27-68)||(55223290-55223331)
chr3 (90-130)||(45103096-45103136)
chr3 (90-125)||(1272560-1272595)
chr3 (70-121)||(18321733-18321784)
chr3 (70-125)||(43139710-43139765)
chr3 (70-124)||(1272495-1272549)
chr3 (70-124)||(30476476-30476530)
chr3 (27-97)||(30580795-30580865)
[»] chr7 (26 HSPs)
chr7 (41-120)||(29053367-29053446)
chr7 (27-118)||(42628303-42628394)
chr7 (27-102)||(7671950-7672025)
chr7 (27-97)||(27028832-27028902)
chr7 (41-94)||(22764753-22764806)
chr7 (27-118)||(4649328-4649421)
chr7 (27-97)||(11016898-11016968)
chr7 (27-97)||(15027571-15027641)
chr7 (27-97)||(41018267-41018337)
chr7 (41-97)||(30217507-30217563)
chr7 (70-125)||(41018229-41018284)
chr7 (70-124)||(27028795-27028849)
chr7 (27-97)||(34854734-34854804)
chr7 (153-214)||(33614425-33614488)
chr7 (70-121)||(34854700-34854751)
chr7 (41-96)||(38975835-38975890)
chr7 (46-97)||(45231908-45231959)
chr7 (47-94)||(48000769-48000816)
chr7 (72-121)||(10419542-10419591)
chr7 (27-87)||(4290584-4290644)
chr7 (153-214)||(22644208-22644271)
chr7 (90-125)||(11016980-11017015)
chr7 (90-125)||(42628406-42628441)
chr7 (78-121)||(45231859-45231902)
chr7 (78-118)||(29053322-29053362)
chr7 (68-120)||(30165327-30165379)
[»] chr8 (22 HSPs)
chr8 (11-125)||(6296606-6296720)
chr8 (41-109)||(39850972-39851040)
chr8 (5-87)||(8796461-8796543)
chr8 (27-97)||(35441008-35441078)
chr8 (7-97)||(4958628-4958717)
chr8 (27-97)||(5033190-5033260)
chr8 (27-97)||(10086786-10086856)
chr8 (7-97)||(45191146-45191236)
chr8 (33-125)||(5667089-5667190)
chr8 (14-87)||(8243414-8243487)
chr8 (5-77)||(31159900-31159972)
chr8 (27-87)||(34229680-34229740)
chr8 (4-87)||(43844487-43844568)
chr8 (70-125)||(34541804-34541859)
chr8 (35-97)||(33841638-33841700)
chr8 (27-115)||(34541842-34541930)
chr8 (90-125)||(5033272-5033307)
chr8 (70-125)||(8243389-8243444)
chr8 (90-125)||(33841583-33841618)
chr8 (70-125)||(34229723-34229778)
chr8 (71-132)||(37618722-37618782)
chr8 (73-125)||(1880323-1880374)
[»] scaffold0016 (2 HSPs)
scaffold0016 (27-120)||(49742-49835)
scaffold0016 (91-125)||(49695-49729)
[»] scaffold0586 (1 HSPs)
scaffold0586 (27-97)||(7086-7156)
[»] scaffold0161 (1 HSPs)
scaffold0161 (27-94)||(27259-27326)
[»] scaffold0481 (2 HSPs)
scaffold0481 (67-121)||(2892-2946)
scaffold0481 (27-75)||(2926-2974)
[»] scaffold1033 (2 HSPs)
scaffold1033 (27-74)||(2265-2312)
scaffold1033 (70-124)||(2295-2349)
[»] scaffold1029 (2 HSPs)
scaffold1029 (27-74)||(2265-2312)
scaffold1029 (70-124)||(2295-2349)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 38674544 - 38674729
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctaca 126  Q
    ||||| ||||||| ||||||||||||||||  ||||||| || |||||||||||| ||||| |||||| || ||||||||||||||||||||  ||||||    
T  38674544 aatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgacattatgattggccaatatcacccaactctatgtcacccaatcgctaca 38674641  T
Q  127 ccattcaaataaattagaactcactattttattcttattggaaatcatccgtctaataacaaaaatggaaaagagtgaaggaataaat 214  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  38674642 ctattcaaataaattagaactcactattttattcttattgaaaatcatccgtttaataacaaaaatggaaaagagtgaaggaataaat 38674729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 29371467 - 29371370
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||    
T  29371467 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacctaactctatgtcacccaaatgcta 29371370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 34062308 - 34062217
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaa 118  Q
    ||||| ||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  34062308 aatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacccaactctatgtcacccaa 34062217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 8337890 - 8337983
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| |||| |||||||||||||||||||| |||||||||| |||||||||| | ||||||| ||||||||||||||||||||||    
T  8337890 aatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtcacccaactctatgtcacccaagt 8337983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 46333985 - 46334078
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||| ||||| || |||||||||||||||||| | |||||||  |||||||||||||||||||||    
T  46333985 aatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatccaactctatgtcacccaagt 46334078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 15220910 - 15220813
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||| ||| ||| ||||||||||||||||||||||||| || |||||||| || ||||||  |||||||| |||||||| |||||||||||||||||    
T  15220910 aatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgattgaccaatgtcacccaactccatgtcacccaagtgcta 15220813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 47303494 - 47303395
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctaca 126  Q
    ||||| ||||||| |||| |||||||||||||||||||| ||||||| ||||||||||||| | |||| || || |||||||| |||| |||||||||||    
T  47303494 aatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcacctaactctatatcactcaagtgctaca 47303395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 49444952 - 49445043
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||| | |||||||||||  |||||||||||| || ||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  49444952 aatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 49445043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 1091583 - 1091643
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  1091583 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatt 1091643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 4609095 - 4609036
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgat 86  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  4609095 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgat 4609036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 48823941 - 48823886
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  48823941 cattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctac 48823886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 29179636 - 29179706
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  29179636 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 29179706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 37155145 - 37155075
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  37155145 aatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtc 37155075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 741541 - 741617
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaa 103  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||||||   |||||||| |||||    
T  741541 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcgaccaatgtcacccaa 741617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 17127581 - 17127673
Alignment:
Q  5 ggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||||||||    ||||| ||||||| ||||||||||||||||||||||||| || |||||||||||| ||||| | |||||||    
T  17127581 ggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtc 17127673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 46334002 - 46333947
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||    
T  46334002 cattgtgacattgtgattggccaatgtcatccaactctatgtcacccaagtgctac 46333947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 32540787 - 32540857
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||||| ||||||||||| | |||||||    
T  32540787 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtc 32540857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 48993956 - 48994026
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| | |||||||    
T  48993956 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtc 48994026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 5995468 - 5995399
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgt 96  Q
    ||||| |||| || ||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||    
T  5995468 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 5995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 28928832 - 28928780
Alignment:
Q  73 tgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||||    
T  28928832 tgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgctac 28928780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 36290460 - 36290548
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattag---------ccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| |         |||||||| ||||||||||||||||||||||    
T  36290460 aatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagt 36290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 45728386 - 45728326
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||||||| |||||||||    
T  45728386 aatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgatt 45728326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 5694942 - 5695004
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaa 103  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| |||  |||||||| |||||    
T  5694942 aatgcttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtcacccaa 5695004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 34062288 - 34062346
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||||||||||||||||| | ||||||| ||||||||||||| |||||| ||||||    
T  34062288 aaacattgtgacattgtgattggtcaatgtcacccaactctatgttacccaaatgctac 34062346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 9157409 - 9157340
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgt 96  Q
    ||||| ||| ||| |||||||| |||||||||||||||| || |||||||||||||||||| | ||||||    
T  9157409 aatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgt 9157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 33219672 - 33219579
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||| ||||| || |||||| |||||||||||   |||||||  |||| |||| ||||| |||||    
T  33219672 aatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtcatccaattctacgtcactcaagt 33219579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 44706828 - 44706893
Alignment:
Q  32 aaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| || ||||||||||||||||||||||||| || ||||| | |||||||||| |||||||||    
T  44706828 aaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtc 44706893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 37155129 - 37155180
Alignment:
Q  71 attgtgacattgtgattagccaatgtcccccaactcta-tgtcacccaagtg 121  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  37155129 attgtgacattgtgattggccaatgtcacccaactctattgtcacccaagtg 37155180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 4609078 - 4609128
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||||||||||||||||  |||||||| |||||||||||||||| |||||    
T  4609078 cattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagt 4609128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 38674561 - 38674511
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    |||||||||||||||||| |||||| || |||||||| |||||||||||||    
T  38674561 cattgtgacattgtgattggccaatatcacccaactccatgtcacccaagt 38674511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 77
Target Start/End: Original strand, 7788306 - 7788337
Alignment:
Q  46 ttgtgaaagagagagaaacataaacattgtga 77  Q
    ||||||||||||||||||||||||||||||||    
T  7788306 ttgtgaaagagagagaaacataaacattgtga 7788337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 21630118 - 21630071
Alignment:
Q  50 gaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||||||||||||| || |||||||||||||||||| | |||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtc 21630071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 47303474 - 47303521
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcac 114  Q
    |||||||||||||||||||||  |||||||| || |||||||||||||    
T  47303474 aaacattgtgacattgtgattgaccaatgtcacctaactctatgtcac 47303521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 48498499 - 48498444
Alignment:
Q  42 atgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||  ||||||||    
T  48498499 atgcttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtc 48498444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 48993944 - 48993909
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  48993944 ccaatgtcacccaactctatgtcacccaagtgctac 48993909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 49444940 - 49444905
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  49444940 ccaatgtcacccaactctatgtcacccaagtgctac 49444905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 1819545 - 1819491
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||||||||||||||||   ||||||| |||||||||||||||  |||||||||    
T  1819545 cattgtgacattgtgattgatcaatgtcacccaactctatgtcattcaagtgcta 1819491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 1819528 - 1819566
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaaca 65  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  1819528 aatcacaatgtcacaatgcttgtgaaagagagagaaaca 1819566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 8337910 - 8337853
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||||||||  ||||||| | |||||||||| ||||| |||||||||    
T  8337910 aaacattgtgacattgtgattgaccaatgt-caccaactctatatcacctaagtgctac 8337853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 28928818 - 28928868
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtga 77  Q
    ||||| ||||||| | ||||||||||||||||||||||| ||||| |||||    
T  28928818 aatcacaatgtcacagtgcttgtgaaagagagagaaacacaaacactgtga 28928868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 48604986 - 48605056
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| |||  |||||||||||||||||||  || |||||||||||| | ||| |||||||||    
T  48604986 aatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtc 48605056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 4579222 - 4579170
Alignment:
Q  72 ttgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||||||||| || ||||||||| || || |||||||||||||||||||||    
T  4579222 ttgtgacattgtggttggccaatgtcacc-aattctatgtcacccaagtgctac 4579170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 48498504 - 48498556
Alignment:
Q  77 acattgtgattagccaatgtcccccaactctatgtcacccaagtgctacaccat 130  Q
    ||||||||||| | ||||||| || |||||||||||||||||||||||| ||||    
T  48498504 acattgtgattggtcaatgtcacc-aactctatgtcacccaagtgctaccccat 48498556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 19711236 - 19711192
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcac 114  Q
    |||||| ||||||||||| | ||||||| ||||||||||||||||    
T  19711236 cattgtaacattgtgattggtcaatgtcacccaactctatgtcac 19711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 63856 - 63763
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  63856 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 63763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 63839 - 63885
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcaccc 116  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  63839 cattgtgacattgtgattggccaatgtcacccaactctatatcaccc 63885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 14229370 - 14229489
Alignment:
Q  5 ggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaac 104  Q
    ||||| ||| ||||||||  | ||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||  |||||    
T  14229370 ggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt-gccaatgtcatccaac 14229468  T
Q  105 tctatgtcacccaagtgctac 125  Q
    |||||||||||||||||||||    
T  14229469 tctatgtcacccaagtgctac 14229489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 29925615 - 29925702
Alignment:
Q  33 aatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||    
T  29925615 aatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgttacccaagt 29925702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 6217263 - 6217356
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| |||| || ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  6217263 aatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 6217356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 2828683 - 2828585
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| ||||||| ||||||| ||||||||||||||||| || |||| ||||||||||||| ||||||||| ||||||||||||||||  |||||||||    
T  2828683 aatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacccaactctatgtcacagaagtgctac 2828585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 2894054 - 2893968
Alignment:
Q  35 tgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    ||||| ||||||||||||||||||||||| | || |||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  2894054 tgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcacccaactctatgtcacccaagtg 2893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 38933686 - 38933593
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| | ||||||| ||||||||||||||||| ||||    
T  38933686 aatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacccaactctatgtcacctaagt 38933593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 37961826 - 37961712
Alignment:
Q  6 gtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaact 105  Q
    |||||||| ||||||||    ||||| |||| || ||||||||||||||||||||||||| ||||||| || |||||||||  | ||||||| |||||||    
T  37961826 gtgatatttgtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtcacccaact 37961727  T
Q  106 ctatgtcacccaagt 120  Q
    ||||| |||||||||    
T  37961726 ctatgccacccaagt 37961712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 15011379 - 15011312
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaat 94  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  15011379 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 15011312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 14470645 - 14470700
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgt 96  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||    
T  14470645 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggctaatgt 14470700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 6722050 - 6721980
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| |||| |||||||||||||||||||| || |||||||| ||||||||| | |||||||    
T  6722050 aatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtc 6721980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 15011362 - 15011412
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  15011362 cattgtgacattgtgattggccaatgtcactcaactctatgtcacccaagt 15011412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 16514523 - 16514453
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||| || ||| |||||| |||||||||    
T  16514523 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtc 16514453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 29508735 - 29508800
Alignment:
Q  32 aaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| || ||||||||||||||||||||||||| || ||||| | |||||||||| |||||||||    
T  29508735 aaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtc 29508800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 14464610 - 14464557
Alignment:
Q  71 attgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    |||||||||||||||||  |||||||| | |||||||||||||| |||||||||    
T  14464610 attgtgacattgtgattgaccaatgtcactcaactctatgtcacacaagtgcta 14464557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 37762040 - 37762100
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||| ||||||  ||||||||||||||||| ||||||| || |||||||| |||||||||    
T  37762040 aatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgatt 37762100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 38933698 - 38933733
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  38933698 ccaatgtcacccaactctatgtcacccaagtgctac 38933733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 2828666 - 2828703
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactct 107  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  2828666 cattgtgacattgtgattggccaatgtcacccaactct 2828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 24116019 - 24115950
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgt 96  Q
    ||||| ||||||  |||||||||||||||| | |||||| |  |||||| ||||||||||| ||||||||    
T  24116019 aatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaatgt 24115950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 2894045 - 2894093
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaa 118  Q
    |||||||||| |||||||  ||||||||  |||||||||||||||||||    
T  2894045 cattgtgacactgtgattgaccaatgtcatccaactctatgtcacccaa 2894093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 16514535 - 16514575
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctacaccat 130  Q
    ||||| || ||||||||||||||||||||||||||| ||||    
T  16514535 ccaatctcacccaactctatgtcacccaagtgctaccccat 16514575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 28819037 - 28818918
Alignment:
Q  6 gtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaact 105  Q
    |||||||| ||||||||  | ||||| ||||||| ||||||||||||||||||||||| | ||  |||||||||||||||||  |||||||| |||||||    
T  28819037 gtgatattggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacccaact 28818938  T
Q  106 ctatgtcacccaagtgctac 125  Q
    ||||||||||||||||||||    
T  28818937 ctatgtcacccaagtgctac 28818918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 3899938 - 3899845
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  3899938 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 3899845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 16971243 - 16971150
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||| ||||| ||||||||||||||||    
T  16971243 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaagtctatgtcacccaagt 16971150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 38134412 - 38134508
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgct 123  Q
    ||||| ||||||| |||||| |||||||||| ||||||| || |||||||||||||||||| |||||| ||  ||||||||||||| ||||||||||    
T  38134412 aatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatccaactctatgtcgcccaagtgct 38134508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 19655278 - 19655187
Alignment:
Q  6 gtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||| ||| |||||||| |  ||||| ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  19655278 gtgacattggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtc 19655187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 16802543 - 16802445
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| ||||||| ||||||||| ||||||||||||||| ||| ||||| ||||||||||| ||||||||| ||||| | ||||| ||| |||||||||    
T  16802543 aatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcacccaaatttatgttacctaagtgctac 16802445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 26662498 - 26662400
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| ||||||| ||| ||||||||| ||||||||||| || || ||| ||||||||||| | ||||||| |||||||||||||||| ||||||||||    
T  26662498 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtcacacaagtgctac 26662400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 26934093 - 26933995
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| ||||||| ||| ||||||||| ||||||||||| || || ||| ||||||||||| | ||||||| |||||||||||||||| ||||||||||    
T  26934093 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctatgtcacacaagtgctac 26933995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 2093953 - 2094062
Alignment:
Q  4 gggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaa 103  Q
    |||||||||| ||||||||  | ||||| ||||||| ||||||||||||||||||||||||| || |||| ||| | ||||||||| |||| || |||||    
T  2093953 gggtgatattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatagtgtgattagtcaatatcacccaa 2094052  T
Q  104 ctctatgtca 113  Q
     |||||||||    
T  2094053 ttctatgtca 2094062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 29699489 - 29699396
Alignment:
Q  4 gggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||||||| ||||||||    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  29699489 gggtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 29699396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 16439237 - 16439167
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||    
T  16439237 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtc 16439167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 12913902 - 12913832
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||| ||| ||  ||||||||||||||||| |||||||||    
T  12913902 aatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtc 12913832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 3180099 - 3180169
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| |||| |||||||||||||||||||| || ||||||| ||||||||||  ||||||||    
T  3180099 aatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtc 3180169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 291219 - 291126
Alignment:
Q  4 gggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||| ||| ||||||||  | ||||| ||||||| |||| |||||||||||| ||||| | || ||||||| |||||||||| |||||||||    
T  291219 gggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtc 291126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 2953289 - 2953204
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||         ||||||||||  |||||||| ||||||||||||||||||||||    
T  2953289 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaa--------gcattgtgattgaccaatgtcacccaactctatgtcacccaagt 2953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 2935867 - 2935926
Alignment:
Q  25 ttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtg 84  Q
    ||||||| ||||||| |||| |||| ||||| ||||||||| ||||||||||||||||||    
T  2935867 ttaatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacattgtg 2935926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 3180119 - 3180061
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||||||||||| |||||   ||||||| |||||||||||||||| ||||||||||    
T  3180119 aaacattgtgacattatgattgatcaatgtcacccaactctatgtcacacaagtgctac 3180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 19598430 - 19598361
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||||||  |||||||||  ||||||||    
T  19598430 aatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtc 19598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 2953301 - 2953336
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  2953301 ccaatgtcacccaactctatgtcacccaagtgctac 2953336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 16971255 - 16971290
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  16971255 ccaatgtcacccaactctatgtcacccaagtgctac 16971290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 16439220 - 16439264
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcac 114  Q
    ||||||||||||||||||   ||||||| ||||||||||||||||    
T  16439220 cattgtgacattgtgattgatcaatgtcacccaactctatgtcac 16439264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 52028648 - 52028554
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||||| || |||||||||||||||||||||||    
T  52028648 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacccaactctatgtcacccaagtg 52028554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 42375132 - 42375016
Alignment:
Q  4 gggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaa 103  Q
    |||||| ||| ||||||||  | ||||| ||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||  |||||||| |||||    
T  42375132 gggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacccaa 42375033  T
Q  104 ctctatgtcacccaagt 120  Q
    |||||||||||||||||    
T  42375032 ctctatgtcacccaagt 42375016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 40789278 - 40789192
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtca 113  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||    
T  40789278 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcaccaaactctatgtca 40789192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 52457693 - 52457775
Alignment:
Q  132 caaataaattagaactcactattttattcttattggaaatcatccgtctaataacaaaaatggaaaagagtgaaggaataaat 214  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  52457693 caaataaattagaactcaattttttattcttattgaaaatcatccgtttaataacaaaaatggaaaagagtgaaagaataaat 52457775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 55090022 - 55090129
Alignment:
Q  14 agtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtca 113  Q
    |||||||||  | ||||| ||||||| ||||||||||||||||||||| ||| || ||||||||||||||||||  |||||||| | |||||||||||||    
T  55090022 agtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55090121  T
Q  114 cccaagtg 121  Q
    ||||||||    
T  55090122 cccaagtg 55090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 47404624 - 47404717
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||||||||  || ||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  47404624 aatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgattgaccaatgtcacccaactctatgtcacccaagt 47404717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 53954732 - 53954616
Alignment:
Q  4 gggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaa 103  Q
    |||||| ||| |||||||| |  ||| | ||||||| |||||||||||||||| ||||||||  | |||||||||||||||||| ||||||||| |||||    
T  53954732 gggtgacattggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgtcacccaa 53954633  T
Q  104 ctctatgtcacccaagt 120  Q
    || ||| ||||||||||    
T  53954632 ctttatatcacccaagt 53954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 47762727 - 47762637
Alignment:
Q  7 tgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||||| ||||||||  | || || ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||    
T  47762727 tgatattggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtc 47762637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 6271822 - 6271731
Alignment:
Q  6 gtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||||| ||||||||    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  6271822 gtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 6271731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 31430500 - 31430590
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||| ||||||||||||||||| ||||   ||| |||||| ||| ||||||||| ||||||||||||||||||||||    
T  31430500 aatcacaatgtcacaatgcttatgaaagagagagaaacacaaac---gtggcattgtaattggccaatgtcacccaactctatgtcacccaagt 31430590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 50384161 - 50384106
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  50384161 cattgtgacattgtgattggccaatgtcacccaactctatgtcacccaagtgctac 50384106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 23444308 - 23444378
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  23444308 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 23444378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 47661941 - 47661871
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  47661941 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 47661871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 51265544 - 51265474
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  51265544 aatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 51265474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 31430523 - 31430462
Alignment:
Q  64 cataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  31430523 cataagcattgtgacattgtgattggtcaatgtcacccaactctatgtcacccaagtgctac 31430462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 38714916 - 38714831
Alignment:
Q  33 aatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaa 118  Q
    ||||||| |||| |||||||||| | ||||||||||| ||| ||||||||||||| |||||| || || |||||||||||||||||    
T  38714916 aatgtcacaatgtttgtgaaagaaatagaaacataaatattatgacattgtgattggccaatatcacctaactctatgtcacccaa 38714831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 24006109 - 24006198
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||| |||| || ||||||||||||||||||||||||||||        ||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  24006109 aatcacaatgacacaatgcttgtgaaagagagagaaacataa--------acattgtgattggtcaatgtcacccaactctatgtcacccaagtgcta 24006198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 47404641 - 47404586
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  47404641 cattgtgacattgtgattgaccaatgtcacccaactctatgtcacccaagtgctac 47404586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 26186055 - 26186165
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc---------ccccaactctatgtcaccca 117  Q
    ||||| ||||||| ||||||||||||||||  ||||||| || |||||||| ||||||||| |||||||||          |||||||||||||||||||    
T  26186055 aatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatgtcaccca 26186152  T
Q  118 agtgctacaccat 130  Q
    |||||||||||||    
T  26186153 agtgctacaccat 26186165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 30861827 - 30861883
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  30861827 aatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 30861883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 24006126 - 24006071
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  24006126 cattgtgtcattgtgattggccaatgtcacccaactgtatgtcacccaagtgctac 24006071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 40789261 - 40789316
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||||| |||||| || || ||||||||||||||||||||||||    
T  40789261 cattgtgacattgtgattggccaatatcaccaaactctatgtcacccaagtgctac 40789316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 45591449 - 45591499
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtga 77  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  45591449 aatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgtga 45591499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 35682264 - 35682195
Alignment:
Q  28 atcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||| ||||||| ||||||||||||||| ||||||||| ||  ||| ||||||||||||| |||||||||    
T  35682264 atcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtc 35682195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 55090052 - 55090001
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    ||||||||||||||||||  |||||||| | |||||||||||||||||||||    
T  55090052 cattgtgacattgtgattgaccaatgtcactcaactctatgtcacccaagtg 55090001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 50384144 - 50384194
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtga 77  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||||    
T  50384144 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtga 50384194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 28693982 - 28693925
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||||||||| ||||||||| | |||||||  |||||| ||||||||||||||||||    
T  28693982 aaacattgtgatattgtgattggtcaatgtcatccaactttatgtcacccaagtgcta 28693925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 42375121 - 42375156
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  42375121 ccaatgtcacccaactctatgtcacccaagtgctac 42375156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 55089933 - 55089878
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||||||||||||||  |||||||| | ||||||||||||||| || ||||||    
T  55089933 cattgtgacattgtgattgaccaatgtcactcaactctatgtcacctaaatgctac 55089878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 25818412 - 25818462
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtga 77  Q
    ||||| ||||||| |||| |||||||||||||||||||| || ||||||||    
T  25818412 aatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgtga 25818462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 31532716 - 31532798
Alignment:
Q  15 gtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||||| || ||||| ||||||| |||   ||| ||||||||||||| | |||||||||||| |||||||| | |||||||    
T  31532716 gtgacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtc 31532798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 52028631 - 52028673
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtc 112  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||    
T  52028631 cattgtgacattgtgattggccaatgtcacccaattctatgtc 52028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 9712900 - 9712847
Alignment:
Q  72 ttgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||| ||||| ||||||||| || ||  ||||||||||||||||||||    
T  9712900 ttgtgacattctgattggccaatgtcaccaaatgctatgtcacccaagtgctac 9712847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 24618617 - 24618737
Alignment:
Q  4 gggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaa 103  Q
    |||||| ||| ||||||||  | ||||| ||||||| ||||||| ||||||||||||||||| || |||||||||||||||||| | ||| ||| |||||    
T  24618617 gggtgacattggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggtcaacgtcacccaa 24618716  T
Q  104 ctctatgtcacccaagtgcta 124  Q
    |||||||||||||||||||||    
T  24618717 ctctatgtcacccaagtgcta 24618737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 31654385 - 31654306
Alignment:
Q  46 ttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatatcacccaagtgctac 31654306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 12343199 - 12343106
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||  | |||||| ||||||||||||||||||||||    
T  12343199 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatgtcacccaactctatgtcacccaagt 12343106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 10521888 - 10521976
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacc 115  Q
    ||||| ||||||| ||||||| ||||||||||||||||| || |||| |||||||||||||  |||||||| | |||||||||||||||    
T  10521888 aatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtcactcaactctatgtcacc 10521976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 2315343 - 2315441
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| ||||||| |||| ||||||||||||| ||||||||| |||| ||  ||||||||||  ||||||| || ||||||||||||| ||||||||||    
T  2315343 aatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatggtattgtgattattcaatgtcacctaactctatgtcacacaagtgctac 2315441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 10521911 - 10521851
Alignment:
Q  64 cataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  10521911 cataagcattgtgacattgtgattggccaatgtcaccaaactctatgtcacccaagtgcta 10521851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 17751000 - 17750931
Alignment:
Q  28 atcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||| ||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||  ||||||||    
T  17751000 atcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtc 17750931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 13043577 - 13043502
Alignment:
Q  6 gtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacatt 81  Q
    |||||||| ||||||||   |||||| ||| ||| ||||||||||||||||||||||||| || ||||||||||||    
T  13043577 gtgatattggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacatt 13043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 551204 - 551274
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| |||| || |||| |||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  551204 aatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 551274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 24587554 - 24587490
Alignment:
Q  33 aatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||||| ||||||||||||| || |||||||| || ||||||||||||||||||  ||||||||    
T  24587554 aatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtc 24587490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 551224 - 551170
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    |||||||||| ||||||||||  |||||||| |||||||||||| ||||||||||    
T  551224 aaacattgtggcattgtgattgaccaatgtcacccaactctatgccacccaagtg 551170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 47677295 - 47677391
Alignment:
Q  28 atcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||   ||||||| |||||||||||||||| |||||||||    
T  47677295 atcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtcacccaactctatgtcacacaagtgcta 47677391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 29031753 - 29031850
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||  ||||| || || ||||||||||||| |||||||||    
T  29031753 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacctaactctatgtcacacaagtgcta 29031850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 1801485 - 1801566
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactcta 108  Q
    ||||| |||| || ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||    
T  1801485 aatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 30476513 - 30476611
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||||  |||||||| |  |||||||| || ||||| ||||||    
T  30476513 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacataactctatatcccccaaatgctac 30476611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 43139748 - 43139818
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||||||||||||||||||||||||||||| || ||||||| |||||| ||| |||||||||    
T  43139748 aatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtc 43139818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 49414502 - 49414560
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  49414502 aaacattgtgacattgtaattggccaatgtcacccaactctatgtcacccaagtgctac 49414560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 1801566 - 1801627
Alignment:
Q  59 agaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 1801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 33689275 - 33689215
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||||    
T  33689275 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt 33689215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 33689258 - 33689313
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  33689258 cattgtgacattgtgattggccaatgtcacccaactcaatgtcacccaagtgctac 33689313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 39385746 - 39385813
Alignment:
Q  46 ttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtca 113  Q
    |||||||||||||||||| | ||| ||||| ||||||||||| ||||||||| |||||||||||||||    
T  39385746 ttgtgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtcacccaactctatgtca 39385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 47492086 - 47492153
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaat 94  Q
    ||||| ||||||| ||||||||||||| ||||||||||| || |||||||||||||||||| ||||||    
T  47492086 aatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaat 47492153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 41753063 - 41752993
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| |||| || ||||||||||||||||| ||||||| |||||||||| |||||||||| |||||||||    
T  41753063 aatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtc 41752993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 51046092 - 51046182
Alignment:
Q  7 tgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||||| ||||||||  | ||||| ||||||| |||| |||||||||||||||||||| || |||| || |||||||||| |||||||||    
T  51046092 tgatattggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtc 51046182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 50524786 - 50524731
Alignment:
Q  42 atgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||    
T  50524786 atgcttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtc 50524731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 30734442 - 30734511
Alignment:
Q  28 atcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||| ||||||| ||||||||||||||| ||||||||| ||  ||| ||||||||||||| |||||||||    
T  30734442 atcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtc 30734511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 18321750 - 18321680
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||| ||||||| ||||| ||||| |||| ||||||||||||||||  ||||||||    
T  18321750 aatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtc 18321680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 49418742 - 49418692
Alignment:
Q  75 tgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||  ||||| || |||||||||||||||||||||||||||    
T  49418742 tgacattgtgattgaccaatatcacccaactctatgtcacccaagtgctac 49418692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 50550074 - 50550004
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| |||| |||||||||||||||||||| || |||||| | ||||||||| | |||||||    
T  50550074 aatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtc 50550004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 55223331 - 55223290
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataa 68  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  55223331 aatcataatgtcacaatgcttgtgaaagagagagaaacataa 55223290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 45103136 - 45103096
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctacaccat 130  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  45103136 ccaatgtcacccaactctatgtcacccaagtgctaccccat 45103096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 1272560 - 1272595
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  1272560 ccaatgtcacccaactctatgtcacccaagtgctac 1272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 18321733 - 18321784
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    ||||||||||||||||||  ||||||||  |||||||||||||| |||||||    
T  18321733 cattgtgacattgtgattgaccaatgtcatccaactctatgtcatccaagtg 18321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 43139765 - 43139710
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||| |||||||||||||  || ||||| |||||||||||||||| ||||||||||    
T  43139765 cattctgacattgtgattgaccgatgtcacccaactctatgtcactcaagtgctac 43139710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 1272549 - 1272495
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    |||||||||| | ||||| ||||||||| || |||||||||||||| ||||||||    
T  1272549 cattgtgacaatttgattggccaatgtcaccaaactctatgtcacctaagtgcta 1272495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 30476530 - 30476476
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    |||||||||||||||||| ||||||||| || | |||| |||||| |||||||||    
T  30476530 cattgtgacattgtgattggccaatgtcacctagctctctgtcacacaagtgcta 30476476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 30580795 - 30580865
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| |||  |||||||||||| ||||||| || || |||||||||||||||  ||||||||    
T  30580795 aatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtc 30580865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 29053367 - 29053446
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  29053367 aatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtcacccaagt 29053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 42628394 - 42628303
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaa 118  Q
    ||||| ||||||  |||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||| ||||||||||||||||||||    
T  42628394 aatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacccaactctatgtcacccaa 42628303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 7671950 - 7672025
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtccccca 102  Q
    ||||| |||| || ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||    
T  7671950 aatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 27028832 - 27028902
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  27028832 aatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtc 27028902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 22764753 - 22764806
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaat 94  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaat 22764806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 4649421 - 4649328
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagaga--aacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaa 118  Q
    ||||| |||||||  ||||||||||||||||||||  |||| || ||||||  ||||||||||  |||||||| ||||||||||||||||||||    
T  4649421 aatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattgaccaatgtcacccaactctatgtcacccaa 4649328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 11016968 - 11016898
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| |||| |||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  11016968 aatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 11016898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 15027641 - 15027571
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||||||  ||||||||| | |||||||    
T  15027641 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtc 15027571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 41018267 - 41018337
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||  |||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||    
T  41018267 aatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtc 41018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 30217507 - 30217563
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||    
T  30217507 aatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtc 30217563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 41018284 - 41018229
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  41018284 cattgggacattgtgattggccaatgtcacccaactctatgtcatccaagtgctac 41018229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 27028849 - 27028795
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||||||||||||||||  |||||||  ||||||||||||||||||||||||||    
T  27028849 cattgtgacattgtgattgtccaatgttacccaactctatgtcacccaagtgcta 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 34854734 - 34854804
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| |||| || ||||||||||||||||| ||||||| |||||||||| ||||||||||  ||||||||    
T  34854734 aatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtc 34854804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 33614425 - 33614488
Alignment:
Q  153 ttttattcttattggaaatcatccgtctaataaca--aaaatggaaaagagtgaaggaataaat 214  Q
    |||| ||||||||||||||||||||| |||||| |  |||| ||||||||||||||||||||||    
T  33614425 ttttgttcttattggaaatcatccgtttaataaaaacaaaaaggaaaagagtgaaggaataaat 33614488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 34854751 - 34854700
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    ||||||| |||||||||| ||||||||| || ||||||||||||||||||||    
T  34854751 cattgtggcattgtgattggccaatgtcaccaaactctatgtcacccaagtg 34854700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 38975890 - 38975835
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgt 96  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||||  |||||||    
T  38975890 aatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgt 38975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 45231908 - 45231959
Alignment:
Q  46 ttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    |||||||||||||||||||| || |||||| ||||||||||| |||||||||    
T  45231908 ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtc 45231959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 48000816 - 48000769
Alignment:
Q  47 tgtgaaagagagagaaacataaacattgtgacattgtgattagccaat 94  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  48000816 tgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 10419542 - 10419591
Alignment:
Q  72 ttgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    ||||||||||||||| |||||||||| || |||||||||| |||||||||    
T  10419542 ttgtgacattgtgatcagccaatgtcaccaaactctatgttacccaagtg 10419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 4290644 - 4290584
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||| ||||||| ||| |||||||||||||||||||||  | ||||||| ||||||||||    
T  4290644 aatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgatt 4290584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 22644208 - 22644271
Alignment:
Q  153 ttttattcttattggaaatcatccgtctaataaca--aaaatggaaaagagtgaaggaataaat 214  Q
    ||||||||||||||||||||||||||  ||||| |  |||| |||||||||||||| |||||||    
T  22644208 ttttattcttattggaaatcatccgttcaataaaagcaaaaaggaaaagagtgaagaaataaat 22644271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 11016980 - 11017015
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  11016980 ccaatgtcacccaactctatgtcacccaagtgctac 11017015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 42628406 - 42628441
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  42628406 ccaatgtcacccaactctatgtcacccaagtgctac 42628441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 45231902 - 45231859
Alignment:
Q  78 cattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    |||||||||| | ||||||| |||||||||||||||||||||||    
T  45231902 cattgtgattggtcaatgtcacccaactctatgtcacccaagtg 45231859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 29053362 - 29053322
Alignment:
Q  78 cattgtgattagccaatgtcccccaactctatgtcacccaa 118  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  29053362 cattgtgattggccaatgtcaccaaactctatgtcacccaa 29053322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 30165327 - 30165379
Alignment:
Q  68 aacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    |||||| |||||||||||||  |||||||| ||||||||||| |||| |||||    
T  30165327 aacattatgacattgtgattgaccaatgtcacccaactctatatcacacaagt 30165379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 6296720 - 6296606
Alignment:
Q  11 attagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatg 110  Q
    ||||||||||||| | ||| | ||||||| ||| ||||||||||||||||||||| || |||| ||||||||||||| | ||||||| ||||||||||||    
T  6296720 attagtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatg 6296621  T
Q  111 tcacccaagtgctac 125  Q
    ||| |||||||||||    
T  6296620 tcatccaagtgctac 6296606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 39851040 - 39850972
Alignment:
Q  41 aatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctat 109  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||||    
T  39851040 aatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctat 39850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 8796543 - 8796461
Alignment:
Q  5 ggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||||||| ||||||||    ||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||    
T  8796543 ggtgatattggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgatt 8796461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 35441008 - 35441078
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||    
T  35441008 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtc 35441078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 4958717 - 4958628
Alignment:
Q  7 tgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||||||||||||||    ||||| || |||| ||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  4958717 tgatattagtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtc 4958628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 5033260 - 5033190
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| | |||||||    
T  5033260 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtc 5033190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 10086856 - 10086786
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||  ||||||||    
T  10086856 aatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtc 10086786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 45191146 - 45191236
Alignment:
Q  7 tgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||||| ||||||||  ||||||| |||| || ||||||| ||||||||||||||||| ||||||||| ||||| ||||| | |||||||    
T  45191146 tgatattggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtc 45191236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 5667190 - 5667089
Alignment:
Q  33 aatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtccc---------ccaactctatgtcacccaagtgct 123  Q
    ||||||| ||||||||||||||||||||||| | || ||||||||||||||||||  |||||||| |         ||||||||||||||||||||||||    
T  5667190 aatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagtgct 5667091  T
Q  124 ac 125  Q
    ||    
T  5667090 ac 5667089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 8243414 - 8243487
Alignment:
Q  14 agtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    |||||||||  | ||||| |||| || ||||||||||||||||||||||||| || ||||||| ||||||||||    
T  8243414 agtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgatt 8243487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 31159972 - 31159900
Alignment:
Q  5 ggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtga 77  Q
    ||||||||| ||||||||    ||||| ||||||| ||||||||||||||||||||||||| ||| |||||||    
T  31159972 ggtgatattggtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaacaaaaatattgtga 31159900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 34229740 - 34229680
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||| ||| ||| ||||||||||||||||||||||||| || |||| |||||||||||||    
T  34229740 aatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgatt 34229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 43844487 - 43844568
Alignment:
Q  4 gggtgatattagtgacattatttaatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgatt 87  Q
    ||||||||||  ||| |||  ||||||| |||||||| ||||||||||  |||||||||||| || ||||||||||||||||||    
T  43844487 gggtgatattgatgatattggttaatcataatgtcaggatgcttgtga--gagagagaaacacaagcattgtgacattgtgatt 43844568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 34541859 - 34541804
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| ||| ||||| ||||||||| ||||||| |||||||||||||||||||    
T  34541859 cattgtgatattatgattggccaatgtcacccaactttatgtcacccaagtgctac 34541804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 33841638 - 33841700
Alignment:
Q  35 tgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||||||||||||||||||||| || ||||||| |||| ||||| | |||||||    
T  33841638 tgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtc 33841700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 34541842 - 34541930
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacc 115  Q
    ||||| ||| ||| ||||||||||||||||||||||||| || ||||||| |||| || |  | ||||||| | ||||||||| |||||    
T  34541842 aatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgtggcattttgctaggtcaatgtcactcaactctatatcacc 34541930  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 5033272 - 5033307
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  5033272 ccaatgtcacccaactctatgtcacccaagtgctac 5033307  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 8243444 - 8243389
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||| ||||||||||   ||||||| | |||||||||||||||||||||||||    
T  8243444 cattgtggcattgtgattgatcaatgtcactcaactctatgtcacccaagtgctac 8243389  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 33841618 - 33841583
Alignment:
Q  90 ccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||||||||||||||||||||    
T  33841618 ccaatgtcacccaactctatgtcacccaagtgctac 33841583  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 34229723 - 34229778
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||| |||||||||  |||||||| || ||||||||||||| ||||||||||    
T  34229723 cattgtgatattgtgattgaccaatgtcacctaactctatgtcacacaagtgctac 34229778  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 37618782 - 37618722
Alignment:
Q  71 attgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctacaccattc 132  Q
    ||||||||||||||||| |||||||| | |||| |||||||||||||||  |||| ||||||    
T  37618782 attgtgacattgtgattggccaatgt-caccaattctatgtcacccaagcactaccccattc 37618722  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 1880323 - 1880374
Alignment:
Q  73 tgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgctac 125  Q
    |||||||||||||||  |||||||| || || |||||||||||||||||||||    
T  1880323 tgtgacattgtgattgaccaatgtcacc-aattctatgtcacccaagtgctac 1880374  T

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Target: scaffold0016 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 49742 - 49835
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagt 120  Q
    ||||| ||||||| ||||||||||||||| ||||||||| || ||||||| |||||||||| ||||||||| || |||||||||||||| ||||    
T  49742 aatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacctaactctatgtcaccgaagt 49835  T

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Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 49729 - 49695
Alignment:
Q  91 caatgtcccccaactctatgtcacccaagtgctac 125  Q
    ||||||| |||||||||||||||||||||||||||    
T  49729 caatgtcacccaactctatgtcacccaagtgctac 49695  T

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Target: scaffold0586 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 7086 - 7156
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaatgtc 97  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||    
T  7086 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtc 7156  T

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Target: scaffold0161 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 27259 - 27326
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgtgacattgtgattagccaat 94  Q
    ||||| ||||||| ||| ||||||||||||||||||||| || ||||||| |||||||||| ||||||    
T  27259 aatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaat 27326  T

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Target: scaffold0481 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 2946 - 2892
Alignment:
Q  67 aaacattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtg 121  Q
    ||||||||||||||||||||| | |||| || |||||||||||||||||| ||||    
T  2946 aaacattgtgacattgtgattggtcaatatcacccaactctatgtcaccccagtg 2892  T

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Target: scaffold0481; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 2926 - 2974
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattgt 75  Q
    ||||| ||||||| |||| |||||||||||||||||||| |||||||||    
T  2926 aatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgt 2974  T

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Target: scaffold1033 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 2312 - 2265
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattg 74  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||||    
T  2312 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

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Target: scaffold1033; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 2295 - 2349
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||||||||||||||||   ||||||| ||||| |||||||||| |||||||||    
T  2295 cattgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 2312 - 2265
Alignment:
Q  27 aatcaaaatgtcagaatgcttgtgaaagagagagaaacataaacattg 74  Q
    ||||| ||||||| ||||||||||||||||||||||||| || |||||    
T  2312 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 2295 - 2349
Alignment:
Q  70 cattgtgacattgtgattagccaatgtcccccaactctatgtcacccaagtgcta 124  Q
    ||||||||||||||||||   ||||||| ||||| |||||||||| |||||||||    
T  2295 cattgtgacattgtgattgatcaatgtcgcccaattctatgtcacacaagtgcta 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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