View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_high_5 (Length: 625)
Name: NF2736_high_5
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 16 - 619
Target Start/End: Complemental strand, 33802700 - 33802092
Alignment:
| Q |
16 |
cataaacatctgatcaaactacatcatgatacaacctttttagggtagctcataaaacttatctaaaattatctacatggtataatttgattgaatacac |
115 |
Q |
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| T |
33802700 |
cataaacatctaatcaaactacatcatgatacaacctttttaggttagctcataaaacttatctaaaattatctacttggtataatt-gattgaatacac |
33802602 |
T |
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| Q |
116 |
gtctaaataaatctatttaattgttccactccatgcaagattataatctattttgtaataatctctagcataaatagagaaactttcacctgaacaat-t |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |
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| T |
33802601 |
gtctaaataaatctatttaattgttccactccatgcaagattataatctattttgtaataatctctagcacaaatagagaaactttcaccggaacaaact |
33802502 |
T |
|
| Q |
215 |
ttatttcacatatgat----cataannnnnnngg-tcaaatttgacatcaatatttgatgatcttccgtgatcgaaaactcgacaccgaatagatttctt |
309 |
Q |
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||||||||||||| || ||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33802501 |
ttatttcacatataattaatcataattttcgatgatcgaatttgacatcaatatttgatgatcttccttgatcgaaaactcgacaccgaatagatttctt |
33802402 |
T |
|
| Q |
310 |
caaatccacctagcaaatatcttttccttaaaaataaagttatcatccaacaaagaacactatgcaaccaacttctctgatagaaacaacctacaattcc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802401 |
caaatccacctagcaaatatcttttccttaaaaataaagttatcatccaacaaagaacactatgcaaccaacttctctgatagaaacaacctacaattcc |
33802302 |
T |
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| Q |
410 |
aactaaattcactctttctacatcgtttaacacaatacctgcaacaataactatatataatgtactaaagtgacccattaaatcataatgattatgtcaa |
509 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
33802301 |
aactaaattcacactttctacatcgtttaacacaatacctgcaacaataactatatataatgtcctaaagtgacccattaattcataatgattatgtcaa |
33802202 |
T |
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| Q |
510 |
tacaatgaatccctcccattgtcaataagttagaatacaaaatgagaagaaaaattactattaaaaagagtagtggtaaataaagtattagaatacaata |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802201 |
tacaatgaatccctcccattgtcaataagttagaatacaaaatgagaagaaaaattactattaaaaagagtagtggtaaataaagtattagaatacaata |
33802102 |
T |
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| Q |
610 |
ttgatgatgt |
619 |
Q |
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|||||||||| |
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| T |
33802101 |
ttgatgatgt |
33802092 |
T |
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