View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2736_high_6 (Length: 562)

Name: NF2736_high_6
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2736_high_6
NF2736_high_6
[»] chr8 (4 HSPs)
chr8 (16-557)||(18014831-18015363)
chr8 (273-559)||(18010866-18011153)
chr8 (45-307)||(43445224-43445488)
chr8 (241-278)||(32529109-32529146)
[»] chr4 (5 HSPs)
chr4 (273-557)||(25322962-25323247)
chr4 (273-559)||(15537144-15537430)
chr4 (37-154)||(16942650-16942767)
chr4 (286-376)||(16937497-16937589)
chr4 (241-278)||(28394896-28394933)
[»] chr1 (3 HSPs)
chr1 (257-433)||(42039863-42040039)
chr1 (16-163)||(24012141-24012288)
chr1 (241-278)||(6831307-6831344)
[»] chr7 (2 HSPs)
chr7 (45-307)||(43586536-43586800)
chr7 (45-307)||(35965979-35966243)
[»] chr6 (1 HSPs)
chr6 (45-307)||(26257674-26257938)


Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 18014831 - 18015363
Alignment:
Q  16 atcataaaatagaagtttttattgacaaccaggcaacaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctcta 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18014831 atcataaaatagaagtttttattgacaaccaggcagcaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctcta 18014930  T
Q  116 cttcttaagagagatgcagcaaaatggagaagtgactttggtttattgcaagtcagaggatcaattagcagacatgtttacaaagccacttcctgtcagc 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  18014931 cttcttaagagagatgcagcaaaatggagaagtaactttggtttattgcaagtcaaaggatcaattagcagacatgtttacaaagccacttcctgtcaac 18015030  T
Q  216 aagtttgagtttttaaggcaaaaagttggagtttgcagatcctaaagcaaggaggagtgttaattattgcttttggactgcattacgtggctgatttatc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18015031 aagtttgagtttttaaggcaaaaagttggagtttgcagatcctaaagcaaggaggagtgttaattattgcttttggactgcattacgtggctgatttatc 18015130  T
Q  316 tttattctctattgtttcagttttttattttagtcaataagtggtacctacactttaggagaaagcagttgttgttatcccacgttcctagtttagtggt 415  Q
    ||||||| ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  18015131 tttattccctattgtttcagttttttattttagtcaataagtgg----------ttaggagaaagcagttgttgttatcccacgttcctagtttagtggt 18015220  T
Q  416 gatgtagctgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtgaaattaat-aattaatttcccattccatttcaacgtattcttc 514  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18015221 gatgtagttgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtgaaattaataaatcaatttcccattccatttcaacgtattcttc 18015320  T
Q  515 cctgtctatcatattatttttcatttataccatataaccaaca 557  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18015321 cctgtctatcatattatttttcatttataccatataaccaaca 18015363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 273 - 559
Target Start/End: Original strand, 18010866 - 18011153
Alignment:
Q  273 tgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttta 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18010866 tgttaattattgcttttggactgcattacgtggctgatttatctttattccctattgtttcagttttttattttagtcaataagtggtacctacacttta 18010965  T
Q  373 ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtagctgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtg 472  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18010966 ggagaaagcagttgttgttatcccacgatcctagtttagtggtgatgtagttgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtg 18011065  T
Q  473 aaattaat-aattaatttcccattccatttcaacgtattcttccctgtctatcatattatttttcatttataccatataaccaacaaa 559  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18011066 aaattaataaatcaatttcccattccatttcaacgtattcttccctgtctatcatattatttttcatttataccatataaccaacaaa 18011153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 45 - 307
Target Start/End: Original strand, 43445224 - 43445488
Alignment:
Q  45 caggcaacaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctctacttcttaagagagatgcagcaaaatggag 144  Q
    |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||| ||||||||||||||||| | || |||| |||||    
T  43445224 caggcatcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacattaagttctacttcttaagagaggttcaacaaagtggag 43445323  T
Q  145 aagtgactttggtttattgcaagtcagaggatcaattagcagacatgtttacaaagccacttcctgtcagcaagtttgagtttttaaggcaaaaagttgg 244  Q
    |||| ||||||||||||||||  ||||| || ||| | |||||  | |||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  43445324 aagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggcagaaaattgg 43445423  T
Q  245 agtttgcagatcctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  43445424 agtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct 43445488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 32529109 - 32529146
Alignment:
Q  241 ttggagtttgcagatcctaaagcaaggaggagtgttaa 278  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  32529109 ttggtgtttgcagctcctaaagcaaggaggagtgttaa 32529146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 273 - 557
Target Start/End: Complemental strand, 25323247 - 25322962
Alignment:
Q  273 tgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttta 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25323247 tgttaattattgcttttggactgcattacgtggctgatttatctttattccctattgtttcagttttttattttagtcaataagtggtacctacacttta 25323148  T
Q  373 ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtagctgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtg 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25323147 ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtagttgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtg 25323048  T
Q  473 aaattaat-aattaatttcccattccatttcaacgtattcttccctgtctatcatattatttttcatttataccatataaccaaca 557  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25323047 aaattaataaatcaatttcccattccatttcaacgtattcttccctgtctatcatattatttttcatttataccatataaccaaca 25322962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 273 - 559
Target Start/End: Original strand, 15537144 - 15537430
Alignment:
Q  273 tgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttta 372  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15537144 tgttaattattgcttttggactgcattgcgtggctgatttatctttattttctatt-tttcagttttttattttagtcaataagtggtacctacacttta 15537242  T
Q  373 ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtagctgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtg 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15537243 ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtagttgtgttctgttttgttttgtgaaacactattaagtgtattgttttagtg 15537342  T
Q  473 aaattaata-attaatttcccattccatttcaacgtattcttccctgtctatcatattatttttcatttataccatataaccaacaaa 559  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15537343 aaattaatatatcaatttcccattccatttcaatgtattcttccctgtctatcatattatttttcatttataccatataaccaacaaa 15537430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 16942650 - 16942767
Alignment:
Q  37 ttgacaaccaggcaacaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctctacttcttaagagagatgcagca 136  Q
    ||||||| |||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||| || ||||||||||||||||||  |||| |||| ||    
T  16942650 ttgacaatcaggcagcaattgcaatttcaaaggatccagtatgttatgggaagactaaacatttcaatatcaagctctacttcttacaagaggtgcaaca 16942749  T
Q  137 aaatggagaagtgacttt 154  Q
    || ||||||||| |||||    
T  16942750 aagtggagaagtcacttt 16942767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 16937497 - 16937589
Alignment:
Q  286 ttttggactgcattacgtggctg--atttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacactttaggag 376  Q
    ||||||||||||||||||||||   ||||||| ||||| | | ||||||||||||  | ||||||||||| |||||| |||||| ||||||||    
T  16937497 ttttggactgcattacgtggcttttatttatccttattttattttgtttcagtttagtgttttagtcaattagtggttcctacattttaggag 16937589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 28394896 - 28394933
Alignment:
Q  241 ttggagtttgcagatcctaaagcaaggaggagtgttaa 278  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  28394896 ttggtgtttgcagctcctaaagcaaggaggagtgttaa 28394933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 257 - 433
Target Start/End: Complemental strand, 42040039 - 42039863
Alignment:
Q  257 ctaaagcaaggaggagtgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42040039 ctaaagcaaggaggagtgttaattattgcttttggactgcattacgtggctgatttatctttattctctattatttcagttttttattttagtcaataag 42039940  T
Q  357 tggtacctacactttaggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtagctgtgttctgt 433  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42039939 tagtacctacactttaggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtagttgtgttctgt 42039863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 24012288 - 24012141
Alignment:
Q  16 atcataaaatagaagtttttattgacaaccaggcaacaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctcta 115  Q
    ||||||| ||||| ||||||||||| |||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  24012288 atcataagatagaggtttttattgataaccagacatcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacattttaacatcaagcttta 24012189  T
Q  116 cttcttaagagagatgcagcaaaatggagaagtgactttggtttattg 163  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  24012188 cttcttacgagaaatgcagcaaaatggagaagtgactttggtttattg 24012141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 6831344 - 6831307
Alignment:
Q  241 ttggagtttgcagatcctaaagcaaggaggagtgttaa 278  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  6831344 ttggtgtttgcagctcctaaagcaaggaggagtgttaa 6831307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 8e-81; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 45 - 307
Target Start/End: Original strand, 43586536 - 43586800
Alignment:
Q  45 caggcaacaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctctacttcttaagagagatgcagcaaaatggag 144  Q
    |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| | || |||| |||||    
T  43586536 caggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctacttcttaagagaggttcaacaaagtggag 43586635  T
Q  145 aagtgactttggtttattgcaagtcagaggatcaattagcagacatgtttacaaagccacttcctgtcagcaagtttgagtttttaaggcaaaaagttgg 244  Q
    |||| ||||||||||||||||  ||||| || ||| | |||||  | |||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  43586636 aagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggcagaaaattgg 43586735  T
Q  245 agtttgcagatcctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  43586736 agtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct 43586800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 45 - 307
Target Start/End: Complemental strand, 35966243 - 35965979
Alignment:
Q  45 caggcaacaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctctacttcttaagagagatgcagcaaaatggag 144  Q
    |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| | || |||| |||||    
T  35966243 caggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacattaagctctacttcttaagagaggttcaacaaagtggag 35966144  T
Q  145 aagtgactttggtttattgcaagtcagaggatcaattagcagacatgtttacaaagccacttcctgtcagcaagtttgagtttttaaggcaaaaagttgg 244  Q
    |||| |||||| |||||||||  ||||| || ||| | |||||  | |||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  35966143 aagtcactttgctttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggcagaaaattgg 35966044  T
Q  245 agtttgcagatcctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  35966043 agtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct 35965979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 45 - 307
Target Start/End: Original strand, 26257674 - 26257938
Alignment:
Q  45 caggcaacaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctctacttcttaagagagatgcagcaaaatggag 144  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| | || |||| |||||    
T  26257674 caggcaacaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacataaagctctacttcttaagagaggttcaacaaagtggag 26257773  T
Q  145 aagtgactttggtttattgcaagtcagaggatcaattagcagacatgtttacaaagccacttcctgtcagcaagtttgagtttttaaggcaaaaagttgg 244  Q
    |||| ||||||||||||||||  ||| | || ||| | |||||  | |||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  26257774 aagtcactttggtttattgcagatcaaaagagcaagtggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggcagaaaattgg 26257873  T
Q  245 agtttgcagatcctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  26257874 agtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct 26257938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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