View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_10 (Length: 476)
Name: NF2736_low_10
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 18601310 - 18601441
Alignment:
| Q |
84 |
caacgtagctgttcttccttccttcttgacccagcccgcagctatggagtgtatacgcaagacnnnnnnngagctaatcgcaaatgacaaggcaaagagt |
183 |
Q |
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| T |
18601310 |
caacgtagctgttcttccttccttcttgacccagcgcgccgctatggagtgtatacgcaagaatttttttgagctaatctcaaatgacaaggcaaagagt |
18601409 |
T |
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| Q |
184 |
catatattttaacaaacacatgtatcattctt |
215 |
Q |
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| T |
18601410 |
catatattttaacaaacacatgtatcattctt |
18601441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 281 - 464
Target Start/End: Original strand, 18601507 - 18601688
Alignment:
| Q |
281 |
gcagaaatgaaattatattggcaccagaagtagaagtttctttatcataagatgtggtaaagaaaacaactaaagtttacaccaaaattctcacacaat- |
379 |
Q |
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| T |
18601507 |
gcagaaatgaaattatattggcacgagaag---aagtttctctatcataagatgtgctaaagaaaacaactaaagtttacaccaaaatcatcgcacaata |
18601603 |
T |
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| Q |
380 |
nnnnnnnnnnnnngcgaactaattgatgttcaaacatacaaggggcacgacaaccaacgatgaaaacctaatacaaagttagtat |
464 |
Q |
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| T |
18601604 |
aaaacaaaaaaaagcgaactaagtgatgttcaaacatacaaggggcacgacaaccaacgatgaacacctagtacaaagttagtat |
18601688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 7306994 - 7306900
Alignment:
| Q |
285 |
aaatgaaattatattggcaccagaagtagaagtttctttatcataagatgtggtaaagaaaacaactaaagtttacaccaaaattctcacacaat |
379 |
Q |
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| T |
7306994 |
aaatgaaattatattaacattaaaagtagaagtttctctaacacaagatgtgccaaagaaaacaactaaagtttacaacaaagtcctcacacaat |
7306900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 27946108 - 27946034
Alignment:
| Q |
292 |
attatattggcaccagaagtagaagtttctttatcataagatgtggtaaagaaaacaactaaagtttacaccaaa |
366 |
Q |
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| T |
27946108 |
attatattaacacaagaagtagaagcttctctagcacaagatgtgccaaagaaaacaactaaagtttacaacaaa |
27946034 |
T |
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