View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_11 (Length: 473)
Name: NF2736_low_11
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 21242424 - 21242294
Alignment:
| Q |
19 |
gctatggcaatggttagaaacatgaattgcattgttacacatatatatagggaagggaaccaagtagcagatattcttgttaatcaagccgtctcattag |
118 |
Q |
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| T |
21242424 |
gctatggcaatggttagaaacatgaattgcattgttacacatatatatagggaagggaaccaagtagcagatattcttgttaatcaagccgtctcattag |
21242325 |
T |
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| Q |
119 |
actcttacactgtttggtatgatgctcatgt |
149 |
Q |
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| T |
21242324 |
actcttacactgtttggtatgattctcatgt |
21242294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 21242120 - 21241990
Alignment:
| Q |
292 |
gaataccatttgtcaactgtaaccttgagcaatttataacctgtatcattttaattttctcataccagttgttcgtaatgcgctgtcctaacacaaattg |
391 |
Q |
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| T |
21242120 |
gaataccatttgtcaactgtaaccttgagcaatttataacctgtatcattttaattttctcataccagttgtttgtaatgcgctggcctaacaaaaattg |
21242021 |
T |
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| Q |
392 |
cacacat-aaatctcctccttgatttaattt |
421 |
Q |
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| T |
21242020 |
cacacataaaatctcctccttgatttaattt |
21241990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 21242181 - 21242142
Alignment:
| Q |
231 |
ttaatatattttcgggttggttagtgctttcctaccaccc |
270 |
Q |
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| T |
21242181 |
ttaatagattttcgggttggttagagctttcctaccaccc |
21242142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 209352 - 209283
Alignment:
| Q |
292 |
gaataccatttgtcaactgtaaccttgagcaatttataacctgtatcattttaattttctcataccagtt |
361 |
Q |
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| T |
209352 |
gaataccatttgtcatctgtaaccttgagcaatttataacctttatcattttaattttctcataccagtt |
209283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 9390730 - 9390790
Alignment:
| Q |
413 |
atttaatttcaaaggcctgtgaccatacagcataccgcttggtgcactatgatagtcagca |
473 |
Q |
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| T |
9390730 |
atttaatttcaaaggtctgtgatcatacagcataccacttggtgcactttgagagtcagca |
9390790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 31940397 - 31940457
Alignment:
| Q |
413 |
atttaatttcaaaggcctgtgaccatacagcataccgcttggtgcactatgatagtcagca |
473 |
Q |
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| T |
31940397 |
atttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagtcagca |
31940457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 472
Target Start/End: Original strand, 1338581 - 1338640
Alignment:
| Q |
413 |
atttaatttcaaaggcctgtgaccatacagcataccgcttggtgcactatgatagtcagc |
472 |
Q |
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| T |
1338581 |
atttaatttcaaaggcctatgatcatacagcataccacttggtgcactttgagagtcagc |
1338640 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 14699313 - 14699369
Alignment:
| Q |
34 |
agaaacatgaattgcattgttacacatatatatagggaagggaaccaagtagcagat |
90 |
Q |
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| T |
14699313 |
agaaatatgaattgtatagttacttatatctatagggaagggaatcaagtagcagat |
14699369 |
T |
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