View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2736_low_15 (Length: 425)
Name: NF2736_low_15
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 31940053 - 31940464
Alignment:
| Q |
1 |
cgaacaaatgtcattgcataatctggaacctgtgtggnnnnnnnngtgtgtggtcaacaaagaactaacttcaaaataaaggtgtccctaagacatgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
31940053 |
cgaacaaatgtcattgcataatctggaacctgtgtggaaaaaaaagtgtgtggtcaacaaagaactaacttcaaaataaatgtgtccctaagacaagaca |
31940152 |
T |
|
| Q |
101 |
agattagtaccaaaggctttccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31940153 |
agattagtaccaaaggctttccagattttagatacactctttcaacagaggggtcccattccacctttttttctttaacaagcactcccttgaggtccct |
31940252 |
T |
|
| Q |
201 |
gaagtttgccccctaaaagggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatacggt |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
31940253 |
gaagtttgccccctaaaaaggcaagcaagcacaattaaaatttacatagagcaacaaagataaaatgacagtactacataatatcaattcaagatacggt |
31940352 |
T |
|
| Q |
301 |
accttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940353 |
accttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagt |
31940452 |
T |
|
| Q |
401 |
cagcagaataat |
412 |
Q |
| |
|
|||||||||||| |
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|
| T |
31940453 |
cagcagaataat |
31940464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 13536352 - 13536453
Alignment:
| Q |
63 |
aactaacttcaaaataaaggtgtccctaagacatgacaagattagtaccaaaggctttccagattttagatgcactctttcaacagaggggtcccattcc |
162 |
Q |
| |
|
||||| ||| |||||||| |||||||||||||| | |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13536352 |
aactagcttaaaaataaatgtgtccctaagacaacaagagattaataccaaaggcttgccagattttagtaattgtctttcaacagaggggtcccattcc |
13536451 |
T |
|
| Q |
163 |
ac |
164 |
Q |
| |
|
|| |
|
|
| T |
13536452 |
ac |
13536453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 13536880 - 13536977
Alignment:
| Q |
291 |
aagatacggtaccttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtg |
388 |
Q |
| |
|
|||||| || |||||||| | |||||||||||| ||||||||||| ||||| | ||||||| ||| || ||||||||| ||||| |||||||||| |
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|
| T |
13536880 |
aagatagggaaccttcttgtgtggaatgtggcagactctctcataatcatctttgtttaattccaatgggaagtgatcatatagcattccacttggtg |
13536977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 1338240 - 1338640
Alignment:
| Q |
1 |
cgaacaaatgtcattgcataatctggaacctgtgtggnnnnnnnngtgtgtggtcaacaaagaactaacttcaaaataaaggtgtccctaagacatgaca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||| |||||||||||||| |||| |
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|
| T |
1338240 |
cgaacaaatgtcatagcataatctggaacctatgtggaaaaaaaaggttgtggtcaacaaagaaataacttcaaaataaatgtgtccctaagacaagaca |
1338339 |
T |
|
| Q |
101 |
agattagtaccaaaggctttccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccct |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||||| || ||| ||||||||||||||| |||||||||| || |||||||||||||| |
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|
| T |
1338340 |
ggattagtaccaagggcttcccagattttagatacactcttttaaaagacgggtcccattccaccttattttctttaacaagaacacccttgaggtccct |
1338439 |
T |
|
| Q |
201 |
gaagtttgccccctaaaagggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatacggt |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||| || |
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|
| T |
1338440 |
gaagtttgccccctaaaaaggcaagcaagcacaattagaatttacatggagcaacaaagataaaataacagtac---ataatatcaattaaagataggga |
1338536 |
T |
|
| Q |
301 |
accttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagt |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
1338537 |
accttctcctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctatgatcatacagcataccacttggtgcactttgagagt |
1338636 |
T |
|
| Q |
401 |
cagc |
404 |
Q |
| |
|
|||| |
|
|
| T |
1338637 |
cagc |
1338640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 9390406 - 9390797
Alignment:
| Q |
1 |
cgaacaaatgtcattgcataatctggaacctgtgtggnnnnnnnngtgtgtggtcaacaaagaactaacttcaaaataaaggtgtccctaagacatgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||| | || |
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|
| T |
9390406 |
cgaacaaatgtcattgcataatctggaacctgtgtgggaaaaaaaggttgtggtcaacaaagaactaacttcaaaataaatgtgtccc-aagacaagtca |
9390504 |
T |
|
| Q |
101 |
agattagtaccaaaggctttccagattttagatgcactctttcaacagaggggtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9390505 |
agattagtaccaaaggctttccagattttagatacactctttcaactgaggggtcccattccaccttgttttctttaacaagcactcccttgaggtccct |
9390604 |
T |
|
| Q |
201 |
gaagtttgccccctaaaagggcaagcaagcacaattaaaatttacatagagcaacaaagataaaataatagtactacataatatcaattcaagatacggt |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| | | |
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|
| T |
9390605 |
gaagtttgccccctaaaaaggcaagcaagcacaattaaaatttacat----------------aataacag---tacataatatcaattcaagatatgat |
9390685 |
T |
|
| Q |
301 |
accttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
9390686 |
accttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatttcaaaggtctgtgatcatacagcataccacttggtgcactttgagagt |
9390785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 53 - 392
Target Start/End: Original strand, 5640178 - 5640515
Alignment:
| Q |
53 |
gtcaacaaagaactaacttcaaaataaaggtgtccctaagacatgacaagattagtaccaaaggctttccagattttagatgcactctttcaacagaggg |
152 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||| || | |||||||||||||||||||| |||||||| |||| |||||||||||||||||| |
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|
| T |
5640178 |
gtcaacaaagaactaacttcaaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatacactctttcaacagaggg |
5640277 |
T |
|
| Q |
153 |
gtcccattccaccnnnnnnnctttaacaagcactcccttgaggtccctgaagtttgccccctaaaag-ggcaagcaagcacaattaaaatttacatagag |
251 |
Q |
| |
|
|||||| ||||| |||| |||||||| ||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||| |
|
|
| T |
5640278 |
gtcccactccacttttttttctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaaggcaagaatgcacaattaaaatttacagggag |
5640377 |
T |
|
| Q |
252 |
caacaaagataaaataatagtactacataatatcaattcaagatacggtaccttcttctttggaatgtggcaaactctctcatagtcatcggtatttaat |
351 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5640378 |
caacaaagataaaataacagaac---ataatatcaattcaagatcaggaaccttcttcttcggaatgaggcaaactctctcatagtcatcgttatttaac |
5640474 |
T |
|
| Q |
352 |
ttcaaaggcctgtgatcatacagcataccacttggtgcact |
392 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5640475 |
agatatggcctgtgatcatacagcagaccacttggtgcact |
5640515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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