View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_16 (Length: 422)
Name: NF2736_low_16
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 20488137 - 20488349
Alignment:
| Q |
19 |
aaagtaaatgatataaaagtaaatggcggaatgaaaacaaagcaatagagaactgaaatgtaaagtactagaaatgcaaagaacagagaatacatacaac |
118 |
Q |
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| T |
20488137 |
aaagtatatgatataaaagtaaatggcggaatgaaatcaaagcaatagagaactgaaatgtaaagtactagaaatgcaaagaacagagaatacataca-- |
20488234 |
T |
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| Q |
119 |
tacaagtaagtaactgaatgcaaataaagaacaaaagcttaagaaaattgcaagaacttgaattcaactttggagtgagattacaagtctaaaggattct |
218 |
Q |
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| T |
20488235 |
----agtaagtaactgaatgcaaataaagaacaaaagcttaagaaaattgcaagaacttgaattcaactttggagtgagattacaagtctaaaggattct |
20488330 |
T |
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| Q |
219 |
ccttttgcctaaaaatgag |
237 |
Q |
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| T |
20488331 |
cctttttcctaaaaatgag |
20488349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 422
Target Start/End: Original strand, 20489526 - 20489693
Alignment:
| Q |
254 |
caggagcacggatcgtgctactcaagactttaggaattctggcataatgtagggcacacagactgtgcttatggatgc------cgtgcgaaagttacta |
347 |
Q |
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| T |
20489526 |
caggagcacggatcttgctactcaagacttta-------tagcataatatagggcacacagactgtgtttatggatgcacggaccatgcgaaagttacta |
20489618 |
T |
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| Q |
348 |
gaattttggttcannnnnnnnnnnnnnnnngctcctttagcctcacactcttggtccttgcgtaattcatccaaa |
422 |
Q |
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| T |
20489619 |
gaattttggttcatttttttctttgtttttgctcctttagcctcacactcttgatccttgcctaattcatccaaa |
20489693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 31974333 - 31974520
Alignment:
| Q |
19 |
aaagtaaatgatataaaagtaaatggcggaatgaaaacaaagcaatagagaactgaaatgtaaagtactagaaatgcaaagaacagagaatacatacaac |
118 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| || || |||||||| | |||| | |
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| T |
31974333 |
aaagtaaatgatataaaagtaaatgacagaatgaaaacaaagcgataaagaactgaaatgtaaagtactgaaattgtaaagaacataaaataga------ |
31974426 |
T |
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| Q |
119 |
tacaagtaagtaactgaatgcaaataaagaacaaaagcttaagaaaattgcaagaacttgaattcaactttggagtgagattacaagtctaaag |
212 |
Q |
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| T |
31974427 |
gacaaggaagcaaaggaatgcaaataaagaagaaaagcttaagaaaacttcaacaacttgatttcaactttggagtaggattacaagtctaaag |
31974520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 12521207 - 12521137
Alignment:
| Q |
135 |
aatgcaaataaagaacaaaagcttaagaaaattgcaagaacttgaattcaactttggagtgagattacaagt |
206 |
Q |
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| T |
12521207 |
aatgcaaataaagaacaaaaacttaaaaaaatat-aggaacttgatttcaactttggagtaagattacaagt |
12521137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 53000536 - 53000606
Alignment:
| Q |
135 |
aatgcaaataaagaacaaaagcttaagaaaattgcaagaacttgaattcaactttggagtgagattacaag |
205 |
Q |
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|||||||||||||||||||| |||||||| | || | ||| |||| || |||||| |||| |||||||||| |
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| T |
53000536 |
aatgcaaataaagaacaaaaacttaagaataatgtaggaatttgattttaactttagagtaagattacaag |
53000606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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