View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_17 (Length: 418)
Name: NF2736_low_17
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 7499696 - 7499313
Alignment:
| Q |
18 |
actattaacgattataaaatattcgagacctctatgtattttctttctagtgagaggtctaagaacatggtcaaattagattacttaccttcatttcaaa |
117 |
Q |
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| T |
7499696 |
actattaacgattataaaatattggagacctctatgtattttctttctagtgagaggtctaagaacatgatcaaattagattacttaccttcatttcaaa |
7499597 |
T |
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| Q |
118 |
aggataaccaatatattgagattttgagttctcgtagtatcaatggtattctttgtatcagtattttccattttgatgaggaaagacttgcattgtggaa |
217 |
Q |
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| T |
7499596 |
aagataaccaatatattgagattttgagttctcgtagtatcaatggtattctttgtatcagtattttccgttttgatgaggaaagacttgcattgtggaa |
7499497 |
T |
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| Q |
218 |
tccagccactgaagaattcaagatcattcctcctagcaatttttagtgtgtaccttatcggaattttgaaccgcttaatcatggattcgtttatgaccat |
317 |
Q |
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| T |
7499496 |
tccagccactgaagaattcaagatcattcctcctagcaattttgagtgtgtaccttatcgggattttgaaccgcttaatcatggattcggttatgaccat |
7499397 |
T |
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| Q |
318 |
gttaggaatgactataaggtgattcgacgtgcaacatttgattatctaacatacgatgatcgtataagacttgatttgaaattt |
401 |
Q |
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| T |
7499396 |
gttaggaatgactataaggtgattcgtcgtgcaacatttgattatctaacatactatgattgtataagacttggtttgtaattt |
7499313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 7489297 - 7489173
Alignment:
| Q |
277 |
ggaattttgaaccgcttaatcatggattcgtttatgaccatgttaggaatgactataaggtgattcgacgtgcaacatttgattatctaacatacgatga |
376 |
Q |
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| T |
7489297 |
ggaagtttggaccgcttaatcatggattcggttatgaccatgttaggaatgactataaggtgattcggcgtgcaacatttgatgagctaacatactatga |
7489198 |
T |
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| Q |
377 |
tcgtataagacttgatttgaaattt |
401 |
Q |
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| T |
7489197 |
ttgtataagacttggtttggaattt |
7489173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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