View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_18 (Length: 408)
Name: NF2736_low_18
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 79 - 394
Target Start/End: Original strand, 18138519 - 18138834
Alignment:
| Q |
79 |
caactttctaaaataacacttttgggcaagaaaattaacttcagattgtaaatactaaaacctgtgataaattttgttcattttaatctcaatgtaagat |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18138519 |
caactttctaaaataacacttttgggcaagaaaattaacttcagattgtaaatactaaaacctgtgataaattttgttcattttaatctcaatgtaagat |
18138618 |
T |
|
| Q |
179 |
gcatgtatgatcataaacttcaatatgagaatacataaatagagcagagtaaacaaagcaatctagatcaataaattataactcgcatgctaccgattag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18138619 |
gcatgtatgatcataaacttcaatatgagaatacataaatagagcagagtaaacaaagcaatctagatcaataaattataactcgcatgctaccgattag |
18138718 |
T |
|
| Q |
279 |
tgttgaatcaaaactacaatttagcattggagtcttttagacattccatgtctcaaaatctataataaagatgattgtaaattaatcaattctaaagcta |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18138719 |
tgttgaatcaaaactacaatttagcattggagtcttttagagattccatgtctcaaaatctataataaagatgattgtaaattaatcaattctaaagcta |
18138818 |
T |
|
| Q |
379 |
caataccatacctttg |
394 |
Q |
| |
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|||||||||||||||| |
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| T |
18138819 |
caataccatacctttg |
18138834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 104 - 348
Target Start/End: Complemental strand, 18097796 - 18097563
Alignment:
| Q |
104 |
gcaagaaaattaacttcagattgtaaatactaaaacctgtgataaa-ttttgttcattttaatctcaatgtaagatgcatgtatgatcataaacttcaat |
202 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||| |
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| T |
18097796 |
gcaagaaaattaacttcagattgtatatacaaaaacctgtgataaaattttgttcatttta-tctcaatgta-----------tgatcataaacttaaat |
18097709 |
T |
|
| Q |
203 |
atgagaatacataaatagagcagagtaaacaaagcaatctagatcaataaattataactcgcatgctaccgattagtgttgaatcaaaactacaatttag |
302 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
18097708 |
atgagaatacataaacagagcagagtaaacaaagcaatctagatcaataaattagaactcgcatgctagcaattagtgttgaatcaaaactataatttag |
18097609 |
T |
|
| Q |
303 |
cattggagtcttttagacattccatgtctcaaaatctataataaag |
348 |
Q |
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| ||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
18097608 |
cgttgaagtctattagacattccatgtctcaaaatctataataaag |
18097563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 335
Target Start/End: Original strand, 37831397 - 37831560
Alignment:
| Q |
172 |
gtaagatgcatgtatgatcataaacttcaatatgagaatacataaatagagcagagtaaacaaagcaatctagatcaataaattataactcgcatgctac |
271 |
Q |
| |
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||||||||||||||||| |||||| || | || | ||| || |||||||| ||||||||||| | |||||||||||| ||||||| |||| ||||| || |
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| T |
37831397 |
gtaagatgcatgtatgaacataaatttaaccattataatgcacaaatagagtagagtaaacaaggaaatctagatcaaaaaattatgactcacatgcaac |
37831496 |
T |
|
| Q |
272 |
cgattagtgttgaatcaaaactacaatttagcattggagtcttttagacattccatgtctcaaa |
335 |
Q |
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|||||||| || ||||||||| | |||||| | |||||||||||||||||| ||||||||||| |
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| T |
37831497 |
cgattagtattaaatcaaaacaataatttatccatggagtcttttagacatttcatgtctcaaa |
37831560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 18097911 - 18097827
Alignment:
| Q |
18 |
aatacctgaatatcaaaatgtttggcaagatatggaattaagaagtgtgtgtttgggaatccaactttctaaaataacacttttg |
102 |
Q |
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|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
18097911 |
aatacctgaacatcaaaatgtttcgcaagatgtggaattaagaagtgtgtgtttgggaatccaactttccaaaataacatttttg |
18097827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 18107370 - 18107287
Alignment:
| Q |
18 |
aatacctgaatatcaaaatgtttggcaagatatggaattaagaagtgtgtgtttgggaatccaactttctaaaataacacttttg |
102 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||| ||||| |||| ||||||||||||||||||| | ||||||||||||| |
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| T |
18107370 |
aatacctgaatatcaaa-tgttaggcaagatatggaatgaagaactgtgcgtttgggaatccaactttccacaataacacttttg |
18107287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 12719952 - 12719880
Alignment:
| Q |
100 |
ttgggcaagaaaattaacttcagattgtaaatactaaaacctgtgataaattttgttcattttaatctcaatg |
172 |
Q |
| |
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|||| |||||||| |||| || ||||||||||| ||||| | ||||||| |||||||||||||||||||||| |
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| T |
12719952 |
ttggccaagaaaactaacatcggattgtaaatagaaaaacgtttgataaaatttgttcattttaatctcaatg |
12719880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 18107253 - 18107211
Alignment:
| Q |
107 |
agaaaattaacttcagattgtaaatactaaaacctgtgataaa |
149 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| ||||||| |
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| T |
18107253 |
agaaaattaacttaagattgtaaatacaaaaacctttgataaa |
18107211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 215 - 346
Target Start/End: Complemental strand, 37876526 - 37876393
Alignment:
| Q |
215 |
aaatagagcagagtaaacaaagcaa--tctagatcaataaattataactcgcatgctaccgattagtgttgaatcaaaactacaatttagcattggagtc |
312 |
Q |
| |
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||||||||||||| ||| ||||||| ||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||| |||||| |||||||||| |
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| T |
37876526 |
aaatagagcagagaaaagaaagcaaaatctagatcaataaattatacctcacatgctaccagttagcgttaaatcaaaactataatttaccattggagtc |
37876427 |
T |
|
| Q |
313 |
ttttagacattccatgtctcaaaatctataataa |
346 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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| T |
37876426 |
ttttagacatttcatgtctcaaaatctataataa |
37876393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 23895155 - 23895288
Alignment:
| Q |
215 |
aaatagagcagagtaaacaaagcaa--tctagatcaataaattataactcgcatgctaccgattagtgttgaatcaaaactacaatttagcattggagtc |
312 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||| |||||| |||||||||| |
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|
| T |
23895155 |
aaatagagcagagaaaagaaagcaaaatctagatcaataaattatacctcacatgctaccagttagcgttaaatcaaaactataatttaccattggagtc |
23895254 |
T |
|
| Q |
313 |
ttttagacattccatgtctcaaaatctataataa |
346 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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|
| T |
23895255 |
ttttagacatttcatgtctcaaaatctataataa |
23895288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 22534662 - 22534743
Alignment:
| Q |
172 |
gtaagatgcatgtatgatcataaacttcaatatgagaatacataaatagagcagagtaaacaaagcaatctagatcaataaa |
253 |
Q |
| |
|
||||||||||| ||||| |||||| || | |||| ||| || ||||| || ||||||||||| |||||||||||||||||| |
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|
| T |
22534662 |
gtaagatgcatatatgaacataaatttaaccatgataatgcagaaatatagtagagtaaacaaggcaatctagatcaataaa |
22534743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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