View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_21 (Length: 393)
Name: NF2736_low_21
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 11688639 - 11689020
Alignment:
| Q |
1 |
tctcatatacgggggtggtaagggaactctttgagaagcattgacctcctttttgctaccaaaggataacaatatgcataaataacatgagatgacaaaa |
100 |
Q |
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| T |
11688639 |
tctcatatatgggggtggtaagggaactctttgagaagcattgacctcctttttgctaccaaaggataacaatatgcataaataacatgagatgacaaaa |
11688738 |
T |
|
| Q |
101 |
acttcctcgaaaatacgaattaaaaaataaaaccgatgggatcggtaaggaacccaaatacataccccaatagattaagctctattgctgccttatactg |
200 |
Q |
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| T |
11688739 |
acttcctcgaaa-tacaaattaaaaaataaaaccgatgggatcggtaaggaacccaaatacataccccaatagattaagctctattgctgccttatactg |
11688837 |
T |
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| Q |
201 |
agaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcacaaactaaaga |
300 |
Q |
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| T |
11688838 |
agaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcacaaactaaaga |
11688937 |
T |
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| Q |
301 |
gaataaaggaaaattcgcaatgattcagtggatcaatttcgacaagtaatgtcatttgaacaagatttaaaggaagttctgtg |
383 |
Q |
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| T |
11688938 |
gaacaaagggaaattcgcaatgattcagtggatcaatttcgacaagtaatgtcatttgaacaagatttaaaggaagttctgtg |
11689020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 302
Target Start/End: Complemental strand, 30959238 - 30959128
Alignment:
| Q |
192 |
cttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcaca |
291 |
Q |
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| T |
30959238 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgtaagagaaatgttgtttgacatgatttccgcgaaattcaca |
30959139 |
T |
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| Q |
292 |
aactaaagaga |
302 |
Q |
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| T |
30959138 |
aactaaagaga |
30959128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 30955659 - 30955627
Alignment:
| Q |
264 |
ctttgacataatctccgtgaaattcacaaacta |
296 |
Q |
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| T |
30955659 |
ctttgacataatttccgtgaaattcacaaacta |
30955627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 7474464 - 7474336
Alignment:
| Q |
171 |
tagattaagctctattgctgccttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgac |
270 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| | ||||| ||| |
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| T |
7474464 |
tagattaagctctattgcggccttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgac |
7474365 |
T |
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| Q |
271 |
ataatctccgtgaaattcacaaactaaag |
299 |
Q |
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| T |
7474364 |
ataagttccgtgaaattcacaaactaaag |
7474336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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