View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2736_low_24 (Length: 368)
Name: NF2736_low_24
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 19419834 - 19419662
Alignment:
| Q |
1 |
accgtaacctcccacccttcctccaccatcctcgatgccgccgaaatcctcaccaccgccggtcacgaagccatggcactcaacctcgaactcgcttccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19419834 |
accgtaacctcccacccttcctccaccatcctcgatgccgccgaaatcctcaccaccgccggtcacgaagccatggcactcaacctcgaactcgcttccc |
19419735 |
T |
|
| Q |
101 |
attctctcatcgctcgccgtcaatctcgctccctaaccatcttcgctcccacgaacttcgctttcagccagat |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19419734 |
attctctcatcgctcgccgtcaatctcgctccctaaccatcttcgctccgacgaacttcgctttcagccagat |
19419662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 19419584 - 19419485
Alignment:
| Q |
251 |
cgttcggcgcgaatatcgctactcttctccccggtcactccctcaccgtcacaactacttccgaccgtaaactctccatcaacaacgtaacggttaatcc |
350 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19419584 |
cgttcggcgcgaatgtcgctactcttctccccggtcactccctcaccgtcacaactacttccgaccgtaaactctccatcaacaacgtaacggttaatcc |
19419485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University