View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2736_low_28 (Length: 334)

Name: NF2736_low_28
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2736_low_28
NF2736_low_28
[»] chr3 (7 HSPs)
chr3 (99-319)||(19577676-19577896)
chr3 (99-278)||(8772006-8772187)
chr3 (99-165)||(34275061-34275127)
chr3 (170-279)||(13592232-13592341)
chr3 (100-163)||(16227502-16227565)
chr3 (151-270)||(19165742-19165861)
chr3 (99-204)||(8767123-8767230)
[»] chr2 (5 HSPs)
chr2 (99-319)||(25533675-25533897)
chr2 (99-161)||(16816199-16816261)
chr2 (99-161)||(16855356-16855418)
chr2 (99-165)||(28923000-28923066)
chr2 (103-164)||(23008649-23008710)
[»] chr1 (2 HSPs)
chr1 (100-303)||(18828888-18829093)
chr1 (99-178)||(18828836-18828915)
[»] chr7 (6 HSPs)
chr7 (146-302)||(13251116-13251272)
chr7 (101-165)||(19202929-19202993)
chr7 (99-162)||(1586975-1587038)
chr7 (168-279)||(20580976-20581087)
chr7 (99-179)||(8315631-8315711)
chr7 (99-158)||(13251311-13251370)
[»] chr6 (4 HSPs)
chr6 (99-165)||(21843006-21843072)
chr6 (147-238)||(28587368-28587459)
chr6 (99-155)||(11176263-11176319)
chr6 (206-282)||(14793362-14793438)
[»] chr8 (5 HSPs)
chr8 (99-164)||(26828294-26828359)
chr8 (99-165)||(24720870-24720936)
chr8 (100-177)||(25232126-25232203)
chr8 (114-165)||(14998305-14998356)
chr8 (206-282)||(12584069-12584145)
[»] chr5 (5 HSPs)
chr5 (99-179)||(16783289-16783369)
chr5 (99-179)||(19054579-19054659)
chr5 (99-163)||(25404975-25405039)
chr5 (99-165)||(24319096-24319162)
chr5 (106-178)||(24263550-24263621)
[»] chr4 (3 HSPs)
chr4 (170-312)||(13130219-13130361)
chr4 (104-163)||(12609380-12609439)
chr4 (105-162)||(13130422-13130480)
[»] scaffold0711 (1 HSPs)
scaffold0711 (99-165)||(6222-6288)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 99 - 319
Target Start/End: Complemental strand, 19577896 - 19577676
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattctgcgcttcatttaacatctattagctcgacgcc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||    
T  19577896 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcgtcttctgtgcttcatttaacgtctattagctcgacgcc 19577797  T
Q  199 ccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggaggaactccatgaactttttaagaagaattaag 298  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577796 ccaatcctgttagggtggcttaaatgaaagaaagaacacacaatccttcttctttctcttgttagggaggaactccatgaactttttaagaagaattaag 19577697  T
Q  299 tgttcccatgctccaatcttt 319  Q
    |||||||||||||||||||||    
T  19577696 tgttcccatgctccaatcttt 19577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 278
Target Start/End: Original strand, 8772006 - 8772187
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggt--caataggttgcctcctattctgcgcttcatttaacatctattagctcgacg 196  Q
    ||||||||||||||||| |||||||||||| ||||||||| || |||  | || | |||||||| || | |||||| || |||||  ||||||||| |||    
T  8772006 gggttgcctcccattcaacgcttgtttaacatctgagtcccgaaggttcccatggattgcctcccatgcagcgctttatataacaattattagctcaacg 8772105  T
Q  197 ccccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggaggaactccatga 278  Q
    || ||||| ||||||||||||||| |  |||||| |||||||  ||| ||| ||||||||||||| || |||||||||||||    
T  8772106 cctcaatcctgttagggtggcttatacaaaagaaagaacacatcatctttcctctttctcttgtttggaaggaactccatga 8772187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 34275127 - 34275061
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||    
T  34275127 gggttgcctcccattcagcgcttctttaacatctgagtcccgacggtcaataggctgcctcctattc 34275061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 13592232 - 13592341
Alignment:
Q  170 cttcatttaacatctattagctcgacgccccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggagga 269  Q
    |||||||| || |||||||||| ||||||   ||| |||||||||||| || ||||||||| |||||||  ||||| | | ||||||||||| || ||||    
T  13592232 cttcatttgacgtctattagcttgacgccttgatcctgttagggtggcctatatgaaagaaagaacacatcatcctccctttttctcttgttcggaagga 13592331  T
Q  270 actccatgaa 279  Q
    ||||||||||    
T  13592332 actccatgaa 13592341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 16227502 - 16227565
Alignment:
Q  100 ggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctat 163  Q
    |||| |||| |||||||||| ||||||| || ||||||  ||||||||||||||||||||||||    
T  16227502 ggtttcctctcattcagcgcatgtttaaagtgtgagtctcgacggtcaataggttgcctcctat 16227565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 19165861 - 19165742
Alignment:
Q  151 ggttgcctcctattctgcgcttcatttaacatctattagctcgacgccccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttc 250  Q
    |||||||||| || | |||||||||||||| ||||||||||||||| | || || ||||||| || | |  || |||||| |||||||  ||||||| |     
T  19165861 ggttgcctcccatgcagcgcttcatttaacgtctattagctcgacgactcagtcctgttaggctgacatgtataaaagaaagaacacatcatccttcctt 19165762  T
Q  251 tttctcttgttagggaggaa 270  Q
     |||||||||| || |||||    
T  19165761 cttctcttgttcggaaggaa 19165742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 8767123 - 8767230
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggt--caataggttgcctcctattctgcgcttcatttaacatctattagctcgacg 196  Q
    ||||||||||||||| |||||||| ||||| ||||||||| || |||  | || | |||||||| || | | ||||||| |||||  ||||||||| |||    
T  8767123 gggttgcctcccattaagcgcttgcttaacatctgagtcccgaaggttcccatggattgcctcccatgcagagcttcatataacaattattagctcaacg 8767222  T
Q  197 ccccaatc 204  Q
    || |||||    
T  8767223 cctcaatc 8767230  T

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Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 99 - 319
Target Start/End: Original strand, 25533675 - 25533897
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtct-gagtccagac-ggtca-ataggttgcctcctattctgcgcttcatttaacatctattagctcgac 195  Q
    ||||||||||||||||||||||| ||| |||||| |||||  ||| ||||  ||||||||||||| || | |||||||||||||| |||||||||| |||    
T  25533675 gggttgcctcccattcagcgcttcttttacgtcttgagtct-gacaggtcccataggttgcctcccatgcagcgcttcatttaacgtctattagcttgac 25533773  T
Q  196 gccccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggaggaactccatgaactttttaagaagaatt 295  Q
    |||   ||| ||||||||||||||| ||||||||| |||||||  |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  25533774 gccttgatcctgttagggtggcttatatgaaagaaagaacacatcatccttcttctttctcttgttaggaaggaacttcatgaactttgtaagaagaatt 25533873  T
Q  296 aagtgttcccatgctccaatcttt 319  Q
    ||||||||||||||||||||||||    
T  25533874 aagtgttcccatgctccaatcttt 25533897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 16816199 - 16816261
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcct 161  Q
    |||||||||||||||||||||||||||||||||| ||||| || | |||||||||| ||||||    
T  16816199 gggttgcctcccattcagcgcttgtttaacgtcttagtcccgatgatcaataggtttcctcct 16816261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 16855356 - 16855418
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcct 161  Q
    |||||||||||||||||||||||||||||||||| ||||| || | |||||||||| ||||||    
T  16855356 gggttgcctcccattcagcgcttgtttaacgtcttagtcccgatgatcaataggtttcctcct 16855418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 28923000 - 28923066
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    |||||||||||||||||| | ||||||||||||||||||| |||| | ||||||| |||||||||||    
T  28923000 gggttgcctcccattcagtgtttgtttaacgtctgagtcccgacgattaataggtggcctcctattc 28923066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 23008710 - 23008649
Alignment:
Q  103 tgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctatt 164  Q
    |||||| ||| ||||| ||||||||||||| ||||| |||||| |||| |||||| ||||||    
T  23008710 tgcctctcatccagcgtttgtttaacgtctcagtcccgacggttaataagttgccacctatt 23008649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 303
Target Start/End: Original strand, 18828888 - 18829093
Alignment:
Q  100 ggttgcctcccattcagcgcttgtttaacgtctgagtccagacggt--caataggttgcctcctattctgcgcttcatttaacatctattagctcgacgc 197  Q
    |||||||||| ||||||||||| ||| |||||| |   | ||||||  | ||||||||||||| || | |||||||||||||| ||||||| || |||||    
T  18828888 ggttgcctcctattcagcgcttcttttacgtcttaagtctgacggttcccataggttgcctcccatgcggcgcttcatttaacgtctattatcttgacgc 18828987  T
Q  198 cccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggaggaactccatgaactttttaagaagaattaa 297  Q
    | | ||| ||||||||||||||| |||||||||  ||||||  | ||||| |||||||||||||  | |||||||||||||||||| |||| ||||||||    
T  18828988 ctcgatcctgttagggtggcttatatgaaagaaataacacatcacccttcctctttctcttgttccgaaggaactccatgaactttgtaaggagaattaa 18829087  T
Q  298 gtgttc 303  Q
    ||||||    
T  18829088 gtgttc 18829093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 18828836 - 18828915
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattctgcgcttcattta 178  Q
    |||||||||||||||||||||||||||||||||||| |||  ||  ||||||||||||||||||||| ||||||| ||||    
T  18828836 gggttgcctcccattcagcgcttgtttaacgtctgattcccaactctcaataggttgcctcctattcagcgcttctttta 18828915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 302
Target Start/End: Complemental strand, 13251272 - 13251116
Alignment:
Q  146 caataggttgcctcctattctgcgcttcatttaacatctattagctcgacgccccaatcatgttagggtggcttaaatgaaagaatgaacacacaatcct 245  Q
    |||| |||||||||| || | |||||||||||||| |||||||||||||| || | ||| | ||| ||||||||| |||||| || |||||||  |||||    
T  13251272 caatgggttgcctcccatgcagcgcttcatttaacgtctattagctcgacacctcgatcctattacggtggcttatatgaaataaagaacacatcatcct 13251173  T
Q  246 tcttctttctcttgttagggaggaactccatgaactttttaagaagaattaagtgtt 302  Q
    || ||||||||||||| || |||||||||||||| |||  ||| |||||||||||||    
T  13251172 tcctctttctcttgtttggaaggaactccatgaattttgcaaggagaattaagtgtt 13251116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 19202929 - 19202993
Alignment:
Q  101 gttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19202929 gttgcctcccattcagcgcttgtttaacgtctgagtcccgacggtcaataggttgcctcctattc 19202993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 1586975 - 1587038
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctccta 162  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  1586975 gggttgcttcccattcagcgcttgtttaacgtctcagtcccgacgatcaataggttgcctccta 1587038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 20580976 - 20581087
Alignment:
Q  168 cgcttcatttaacatctattagctcgacgccccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggag 267  Q
    |||| |||||||| |||||||||||||| ||   ||||| |||||||||| |  ||||||||| |||||||  | ||||| ||||||||||||| || ||    
T  20580976 cgctccatttaacgtctattagctcgaccccttgatcatcttagggtggcctgtatgaaagaaagaacacatcaaccttcctctttctcttgttcggaag 20581075  T
Q  268 gaactccatgaa 279  Q
    ||||||||||||    
T  20581076 gaactccatgaa 20581087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 8315711 - 8315631
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattctgcgcttcatttaa 179  Q
    ||||| ||||||||| | || ||||||||||||| ||||| ||| ||||||| |||||||| ||||| ||||||| |||||    
T  8315711 gggtttcctcccattgatcgtttgtttaacgtcttagtcctgacagtcaataagttgcctcatattcagcgcttcttttaa 8315631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 13251370 - 13251311
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcct 158  Q
    ||||| ||||||||||||||||||||||| || |||||   |||| ||||||||||||||    
T  13251370 gggtttcctcccattcagcgcttgtttaatgtttgagttatgacgctcaataggttgcct 13251311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 21843072 - 21843006
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21843072 gggttgcctccctttcagcgcttgtttaacgtctgagtctagacggtcaataggttgcctcctattc 21843006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 28587459 - 28587368
Alignment:
Q  147 aataggttgcctcctattctgcgcttcatttaacatctattagctcgacgccccaatcatgttagggtggcttaaatgaaagaatgaacaca 238  Q
    |||| |||| ||||||| | || ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||  |||||||    
T  28587459 aatatgttgtctcctatccagcacttcatttaacgtctattagctcgacgcctcaatcctgttagggtggcttatatgaaagagagaacaca 28587368  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 11176319 - 11176263
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttg 155  Q
    ||||||||||||||| |||| |||||||| |||| ||||| |||| |||||| ||||    
T  11176319 gggttgcctcccatttagcgattgtttaatgtcttagtcccgacgatcaataagttg 11176263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 14793438 - 14793362
Alignment:
Q  206 tgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggaggaactccatgaactt 282  Q
    ||||||||||||  |||||| |||| ||| | |  |||||||||||| |||||||| || ||||| |||||||||||    
T  14793438 tgttagggtggcaaaaatgatagaaagaatatatcatccttcttcttcctcttgtttggcaggaattccatgaactt 14793362  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 26828359 - 26828294
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctatt 164  Q
    ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  26828359 gggttgcctcccattcaacgcttgtttaacgtatgagtcctgacggtcaataggttgcctcctatt 26828294  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 24720936 - 24720870
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    |||||| |||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  24720936 gggttgtctcctattaagcgcttgtttaacgtctgagtcccgacggtcaataagttgcctcctattc 24720870  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 25232126 - 25232203
Alignment:
Q  100 ggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattctgcgcttcattt 177  Q
    |||||||||||||||| | |||||||||| | ||||||| ||||||||||||||||| ||||||||  ||||||||||    
T  25232126 ggttgcctcccattcaacacttgtttaacatttgagtcctgacggtcaataggttgcatcctattcaacgcttcattt 25232203  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 14998305 - 14998356
Alignment:
Q  114 cagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  14998305 cagcgcttgtttaacgtctgattcccgacggtcaataggttgtctcctattc 14998356  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 12584145 - 12584069
Alignment:
Q  206 tgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggaggaactccatgaactt 282  Q
    ||||||||| ||  |||||| |||| ||| | || |||||||||||| |||||||| || ||||| |||||||||||    
T  12584145 tgttagggttgcaaaaatgatagaaagaatataccatccttcttcttcctcttgtttggtaggaattccatgaactt 12584069  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 16783369 - 16783289
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattctgcgcttcatttaa 179  Q
    ||||||| |||| ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||    
T  16783369 gggttgcatccccttcagcgcttgttcaacgtctgagtcccgacggttaataggttgcctcctattcagcgcttcttttaa 16783289  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 19054579 - 19054659
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattctgcgcttcatttaa 179  Q
    |||||||||||||||||||| |||||||||||||||||||   |||||||||| ||| ||||||| | ||||||| |||||    
T  19054579 gggttgcctcccattcagcgtttgtttaacgtctgagtcccagcggtcaatagattgtctcctatccagcgcttcttttaa 19054659  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 25405039 - 25404975
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctat 163  Q
    ||||||||||||||||| | |||||||||||||||| ||| || |||||||||||| ||||||||    
T  25405039 gggttgcctcccattcaacacttgtttaacgtctgaatcccgatggtcaataggtttcctcctat 25404975  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 24319162 - 24319096
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    ||||||||||||||||| ||||| ||||| ||| ||||||  || ||||||||||||||||||||||    
T  24319162 gggttgcctcccattcaacgcttttttaatgtccgagtcccaacagtcaataggttgcctcctattc 24319096  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 24263550 - 24263621
Alignment:
Q  106 ctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattctgcgcttcattta 178  Q
    ||||||||||||||||||||||||||| ||||| |||  | ||||||||||||| ||||| | ||||| ||||    
T  24263550 ctcccattcagcgcttgtttaacgtcttagtcctgacaat-aataggttgcctcatattcagtgcttctttta 24263621  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 312
Target Start/End: Complemental strand, 13130361 - 13130219
Alignment:
Q  170 cttcatttaacatctattagctcgacgccccaatcatgttagggtggcttaaatgaaagaatgaacacacaatccttcttctttctcttgttagggagga 269  Q
    |||||||| || | ||||||||||||||| | ||| | ||||||||||||  ||||||||| |||||||  ||||||| |||||||||||||    ||||    
T  13130361 cttcattttacgtttattagctcgacgcctcgatcctcttagggtggcttgtatgaaagaaagaacacatcatccttcatctttctcttgttcaaaagga 13130262  T
Q  270 actccatgaactttttaagaagaattaagtgttcccatgctcc 312  Q
    |||||||||| ||   ||| |||| ||||||||| ||||||||    
T  13130261 actccatgaatttggcaaggagaagtaagtgttcacatgctcc 13130219  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 12609380 - 12609439
Alignment:
Q  104 gcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctat 163  Q
    |||||||||||| |||||| ||||||||||||||  |||||||||||||||| |||||||    
T  12609380 gcctcccattcaacgcttggttaacgtctgagtctcgacggtcaataggttgtctcctat 12609439  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 13130480 - 13130422
Alignment:
Q  105 cctcccattcagcgcttgtttaacgtctgagt-ccagacggtcaataggttgcctccta 162  Q
    |||||||||||||| ||||||||||||||||| || |||| |||||||||| |||||||    
T  13130480 cctcccattcagcgtttgtttaacgtctgagtccccgacgatcaataggttacctccta 13130422  T

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Target: scaffold0711 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 6288 - 6222
Alignment:
Q  99 gggttgcctcccattcagcgcttgtttaacgtctgagtccagacggtcaataggttgcctcctattc 165  Q
    ||||||||||||||||||| ||| |||||||||| ||| | || ||||||||||||| |||||||||    
T  6288 gggttgcctcccattcagctcttttttaacgtcttagttctgatggtcaataggttgtctcctattc 6222  T

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