View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2736_low_30 (Length: 313)
Name: NF2736_low_30
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_30 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 4602460 - 4602749
Alignment:
| Q |
10 |
gcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4602460 |
gcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtc |
4602559 |
T |
|
| Q |
110 |
tctattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4602560 |
tctattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagttt |
4602659 |
T |
|
| Q |
210 |
ttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcacagaagttaatat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4602660 |
ttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcacagaagttaatat |
4602749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 54 - 298
Target Start/End: Original strand, 4617737 - 4617981
Alignment:
| Q |
54 |
gcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa |
153 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||| | |||| || |||||||| ||| | ||||||||||| ||||| |
|
|
| T |
4617737 |
gcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaattctaacataa |
4617836 |
T |
|
| Q |
154 |
tatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt |
253 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4617837 |
tatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaaacatccatt |
4617936 |
T |
|
| Q |
254 |
tgttagataactatcatctgcatatcataagcacagaagttaata |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
4617937 |
tgttagataactctcatctgcatatcataaggacgaaagttaata |
4617981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 4592924 - 4593172
Alignment:
| Q |
32 |
agaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatt |
131 |
Q |
| |
|
|||||| |||||||| | || ||||| |||||||||||||||||||||||| |||||||||||| |||| |||||| | ||| | | |||| || | |
|
|
| T |
4592924 |
agaaggaaacatagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccaca |
4593023 |
T |
|
| Q |
132 |
tcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatcta |
231 |
Q |
| |
|
|||| | || | || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4593024 |
tcaattacaaagtttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatcta |
4593123 |
T |
|
| Q |
232 |
cttttgtttccaaacatccatttgttagataactatcatctgcatatca |
280 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4593124 |
ctttagtttccaaatatccatttgttagataactctcatctgcatatca |
4593172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 4564404 - 4564652
Alignment:
| Q |
32 |
agaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatt |
131 |
Q |
| |
|
|||||| |||||||| | || ||||| ||||||||||||| |||||||| | |||||||||||| ||| ||||||||| | || | |||| || |
|
|
| T |
4564404 |
agaaggaaacatagaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgca |
4564503 |
T |
|
| Q |
132 |
tcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatcta |
231 |
Q |
| |
|
|||| | || |||| ||||||||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
4564504 |
tcaattacaaagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatcta |
4564603 |
T |
|
| Q |
232 |
cttttgtttccaaacatccatttgttagataactatcatctgcatatca |
280 |
Q |
| |
|
| || ||||||||| |||||||||||||||| || | |||||||||||| |
|
|
| T |
4564604 |
cattagtttccaaatatccatttgttagatagctctgatctgcatatca |
4564652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 4514568 - 4514312
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg |
126 |
Q |
| |
|
|||| |||||||| ||||||||| || |||||||| |||||||||||||| ||||| ||||||| |||| |||| ||| |||||| || ||||||| |
|
|
| T |
4514568 |
tatagagaagggagcatagaataaagagcattcataacatcactctcaagatcattagaagtatttaaaaaaatagcagaagctctatgaagtctatcta |
4514469 |
T |
|
| Q |
127 |
caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca |
226 |
Q |
| |
|
| |||||||| | ||||||| ||| | |||||| | ||||||||||| ||| | ||| ||| ||| |||| | ||||||| ||||||||||||||| |
|
|
| T |
4514468 |
ccatttcaaagataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagtttcgcaaacctggaatcca |
4514369 |
T |
|
| Q |
227 |
atctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
|| ||||| || |||||| |||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
4514368 |
gtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataa |
4514312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 4506527 - 4506812
Alignment:
| Q |
12 |
aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctc |
111 |
Q |
| |
|
||||| || ||||| |||| |||||| |||||| || || ||||||| |||| ||||||||||||||| ||||||| | || |||| |||| ||| |
|
|
| T |
4506527 |
aaagggccaatagtgtatagagaaggaaacataatatcaagagcattcagaacattactctcaagttcattagaagtattgagaacaatagaagaggctc |
4506626 |
T |
|
| Q |
112 |
tattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttttt |
211 |
Q |
| |
|
||| |||| | ||||| ||||| || ||||||| | | | ||| || |||||||||||||| ||| | ||| ||| ||||||| | ||||||| | |
|
|
| T |
4506627 |
tatgaaatgtttctgctgcttcaataataaattctatcctcaaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttct |
4506726 |
T |
|
| Q |
212 |
caaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcacagaagttaat |
297 |
Q |
| |
|
||||||||||||||| ||||| || || |||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
4506727 |
caaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagttaat |
4506812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 4626619 - 4626892
Alignment:
| Q |
10 |
gcaaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtc |
109 |
Q |
| |
|
|||||||||| || ||||||| |||| ||||| ||||||| || |||||||||||||||| ||||||||||| |||||| || |||| |||| || | |
|
|
| T |
4626619 |
gcaaaggtccaatggtatatacagaaaggaacgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgc |
4626718 |
T |
|
| Q |
110 |
tctattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttt |
209 |
Q |
| |
|
||| | |||||||||||| ||||| | ||||||||||| | |||||| |||| ||||||||| ||| ||| ||||| ||| |||| ||||||||| |
|
|
| T |
4626719 |
tctgtgaaatctatctgccgcttcaatgagaaattctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttc |
4626818 |
T |
|
| Q |
210 |
ttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
| ||| || ||||| ||||||| ||| || || ||| |||||||||| | |||| | |||||||| | |||||| |
|
|
| T |
4626819 |
tgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataa |
4626892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 4299283 - 4299012
Alignment:
| Q |
12 |
aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctc |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |||| |||| ||| || |
|
|
| T |
4299283 |
aaaggtccaatagtatataaagaagggaacatagaatagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctt |
4299184 |
T |
|
| Q |
112 |
tattaaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagttttt |
211 |
Q |
| |
|
| | |||||||||||| ||||| ||||||||||| | ||||||||||| ||| |||| ||| ||||| | |||||||| |||||||| | |
|
|
| T |
4299183 |
tgtgaaatctatctgccgcttcaatggcaaattctaccatgacatcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctg |
4299084 |
T |
|
| Q |
212 |
caaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
||| |||||||| || |||| ||| | || ||| |||| ||||| | |||||| |||||||| | |||||| |
|
|
| T |
4299083 |
caatcctggaatacagtctagtttgatgtctaaatatccgtttgtcaaataactctcatctgcttgtcataa |
4299012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 4259616 - 4259547
Alignment:
| Q |
12 |
aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat |
81 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
4259616 |
aaaggtccaatagcatataaagaagggaacatagaatagagcacattcattacatcactctcaagttcat |
4259547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 4481554 - 4481631
Alignment:
| Q |
203 |
aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatca |
280 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||| |||||| ||||| |||||| |||||||||||||| |
|
|
| T |
4481554 |
aaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca |
4481631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 3172602 - 3172682
Alignment:
| Q |
203 |
aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | || |||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
3172602 |
aaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatcataa |
3172682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 4517182 - 4517267
Alignment:
| Q |
203 |
aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcaca |
288 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| || |||||| |||||||||| | |||||| ||||||||||||||||| |||| |
|
|
| T |
4517182 |
aaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataatcaca |
4517267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 4575170 - 4575249
Alignment:
| Q |
204 |
aagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
||||||||||||||||| ||||| || | |||||| |||||| || |||||||||||| ||| |||||||||| |||||| |
|
|
| T |
4575170 |
aagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataa |
4575249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 4470488 - 4470562
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaata |
101 |
Q |
| |
|
|||| ||||||||| |||||||| ||| ||||||| |||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
4470488 |
tatagagaagggaatatagaatagagttcattcataacatcactttcaagttcattagaagtattcaaaacaata |
4470562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 279
Target Start/End: Complemental strand, 4266613 - 4266358
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg |
126 |
Q |
| |
|
|||| ||||||||||||||| || || |||||||| ||||||||||||||||||| ||||||| | || |||| |||| ||| | | ||||||| | |
|
|
| T |
4266613 |
tatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagaggctcggtgacatctatccg |
4266514 |
T |
|
| Q |
127 |
caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca |
226 |
Q |
| |
|
| | ||| || |||| || ||| | |||||| |||||||| |||| || | ||| ||| ||| ||||||| |||||||| ||||||| ||||||| |
|
|
| T |
4266513 |
ccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagttttgcaaaccttgaatcca |
4266414 |
T |
|
| Q |
227 |
---atctacttttgtttccaaacatccatttgttagataactatcatctgcatatc |
279 |
Q |
| |
|
| | ||||| | || ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
4266413 |
gtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc |
4266358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 4458280 - 4458534
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg |
126 |
Q |
| |
|
|||| ||||||||||||||| || || | |||||| ||||||||||||||||||| ||||||| | || |||| |||| |||||| | ||||||||| |
|
|
| T |
4458280 |
tatatagaagggaacatagagtagagagtattcataacatcactctcaagttcataagaagtattgataacaatagaagaggctctatgacatctatctg |
4458379 |
T |
|
| Q |
127 |
caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca |
226 |
Q |
| |
|
| | ||| | |||| || ||| | || ||| |||||||| || | ||| | ||| ||| ||| ||||||| |||||||| |||||||| |||||| |
|
|
| T |
4458380 |
ccacttcggttataaattttatcatcaaattattaggatctgtaatctttataaaatcaggaaggtccttcaacctaaagttttgcaaacctgaaatcca |
4458479 |
T |
|
| Q |
227 |
---atctacttttgtttccaaacatccatttgttagataactatcatctgcatat |
278 |
Q |
| |
|
| | |||||| | |||||| |||||||||||| |||||| || ||||||||| |
|
|
| T |
4458480 |
gtcaccgacttttttgtccaaatatccatttgttaaataactctcttctgcatat |
4458534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 4461988 - 4462064
Alignment:
| Q |
207 |
tttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
|||||||||||||||||||| || |||| || || ||| |||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
4461988 |
tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatcataa |
4462064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
| Q |
208 |
ttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatca |
280 |
Q |
| |
|
||||||||||||||||||| || ||||| || |||||| ||||| |||||||| ||| |||||||||||||| |
|
|
| T |
4489627 |
ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca |
4489555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 4561189 - 4561253
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtatt |
91 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4561189 |
tatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtatt |
4561253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 4574993 - 4575057
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtatt |
91 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4574993 |
tatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtatt |
4575057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 4470665 - 4470744
Alignment:
| Q |
204 |
aagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
||||||||||||||||||||||| || |||| | || ||| |||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
4470665 |
aagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatcataa |
4470744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 4561366 - 4561445
Alignment:
| Q |
204 |
aagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| || |||| | || |||||||||||| ||| |||||||||| |||||| |
|
|
| T |
4561366 |
aagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcatgtcataa |
4561445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 278
Target Start/End: Original strand, 4598969 - 4599106
Alignment:
| Q |
141 |
aattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgttt |
240 |
Q |
| |
|
|||||||| ||| || ||||||||||||| ||| ||| | ||| ||| ||||||| |||||||||| || || ||||| ||||||||||| |||| |
|
|
| T |
4598969 |
aattctactatagaataatttggatctgttatccctataaaatcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctactttagttt |
4599068 |
T |
|
| Q |
241 |
ccaaacatccatttgttagataactatcatctgcatat |
278 |
Q |
| |
|
||||| |||| ||||| ||| ||||||||||| |||| |
|
|
| T |
4599069 |
ccaaatatccgtttgtcagacgactatcatctgtatat |
4599106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 4622822 - 4622899
Alignment:
| Q |
24 |
gtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaata |
101 |
Q |
| |
|
||||| ||||| |||||||| ||||| || |||||||| ||||| ||||||||||||| |||||||| |||| |||| |
|
|
| T |
4622822 |
gtatacaaagatgggaacattgaatagagcgcattcatcgcatcagtctcaagttcattataagtattaaaaataata |
4622899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 4484111 - 4484016
Alignment:
| Q |
203 |
aaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttg-ttagataactatcatctgcatatcataagcacagaagttaat |
297 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||| || |||||| || |||||| |||||||||| | || |||||||||||| ||| |||||||| |
|
|
| T |
4484111 |
aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatcataattacaaaagttaat |
4484016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 4481378 - 4481432
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat |
81 |
Q |
| |
|
|||| ||||||||| |||||||| || | |||||| ||||||||||||||||||| |
|
|
| T |
4481378 |
tatagagaagggaatatagaatagagagaattcataacatcactctcaagttcat |
4481432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 4568906 - 4568980
Alignment:
| Q |
212 |
caaacctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataagcaca |
288 |
Q |
| |
|
||||||||||||||| || ||||| || ||||| |||||||||| ||||||| |||||||||||| |||| |||| |
|
|
| T |
4568906 |
caaacctggaatccagtcaactttagtgaccaaatatccatttgtcagataac--tcatctgcatattataatcaca |
4568980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 4580915 - 4580972
Alignment:
| Q |
216 |
cctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctg |
273 |
Q |
| |
|
|||||||| ||||||||||| || |||||| |||| ||||| |||||||| ||||||| |
|
|
| T |
4580915 |
cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctg |
4580972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 54 - 298
Target Start/End: Original strand, 1281829 - 1282072
Alignment:
| Q |
54 |
gcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa |
153 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
1281829 |
gcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaagaattctaacataa |
1281928 |
T |
|
| Q |
154 |
tatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt |
253 |
Q |
| |
|
|||| ||| ||||| ||||||||||| |||||| ||| || |||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1281929 |
tatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttccaaatatccatt |
1282028 |
T |
|
| Q |
254 |
tgttagataactatcatctgcatatcataagcacagaagttaata |
298 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||| ||||||||| |
|
|
| T |
1282029 |
tgttagataactctcatctgca-atcataagtacaaaagttaata |
1282072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 281
Target Start/End: Original strand, 185 - 406
Alignment:
| Q |
60 |
attacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataatatcat |
159 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| |||||||||| | || | |||| || | |||| || || |||| ||||||||||| |
|
|
| T |
185 |
attacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatcat |
284 |
T |
|
| Q |
160 |
ttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttag |
259 |
Q |
| |
|
||||||| ||||| |||||| |||||| || || |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
285 |
ttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttag |
384 |
T |
|
| Q |
260 |
ataactatcatctgcatatcat |
281 |
Q |
| |
|
|| || ||||||||||||||| |
|
|
| T |
385 |
atgtctctcatctgcatatcat |
406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 281
Target Start/End: Original strand, 1674948 - 1675169
Alignment:
| Q |
60 |
attacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataatatcat |
159 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| |||||||||| | || | |||| || | |||| || || |||| ||||||||||| |
|
|
| T |
1674948 |
attacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatcat |
1675047 |
T |
|
| Q |
160 |
ttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatttgttag |
259 |
Q |
| |
|
||||||| ||||| |||||| |||||| || || |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
1675048 |
ttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgttag |
1675147 |
T |
|
| Q |
260 |
ataactatcatctgcatatcat |
281 |
Q |
| |
|
|| || ||||||||||||||| |
|
|
| T |
1675148 |
atgtctctcatctgcatatcat |
1675169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 20863290 - 20863034
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctattaaatctatctg |
126 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||| |||||||||||||| |||||| ||||||| |||| |||| |||| |||| | |||||||||| |
|
|
| T |
20863290 |
tatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatcta |
20863191 |
T |
|
| Q |
127 |
caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaaacctggaatcca |
226 |
Q |
| |
|
| | ||||| | ||||||| || |||||| |||| ||||||||| || | ||||| ||| |||| | || ||| |||||||||||||| |
|
|
| T |
20863190 |
ctacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacctggaatccg |
20863091 |
T |
|
| Q |
227 |
atctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
||| ||||| || |||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
20863090 |
atcaactttagtctccaaatatccatttgttagataactctcatctgtatatcataa |
20863034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 3177 - 2909
Alignment:
| Q |
15 |
ggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaataatagagtctctat |
114 |
Q |
| |
|
||||||||| | ||||| || ||||||||||| | || ||||||| ||||||||||||||||||||| ||||| || |||| ||| ||| |||| | |
|
|
| T |
3177 |
ggtccgatactgtataatgatgggaacatagagtggagcgcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgt |
3078 |
T |
|
| Q |
115 |
taaatctatctgcaatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtctttcaaccgaaagtttttcaa |
214 |
Q |
| |
|
|||| |||||| ||||| || ||||||||||||| |||||| ||||| |||| || ||| ||||| ||| ||| || | ||||||||||||| |
|
|
| T |
3077 |
gaaattgatctgctgcttcaatgaaaaattctaccataaaatcattcagatcttttgttcttataaagtcaggaaggtcctttagtcgaaagtttttcat |
2978 |
T |
|
| Q |
215 |
acctggaatccaatctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa |
283 |
Q |
| |
|
||| ||||| ||||||||||| | |||||| ||||| |||| | ||||||||||||||| | |||||| |
|
|
| T |
2977 |
acccggaatacaatctactttgttgtccaaatatccacttgtcaaataactatcatctgcttgtcataa |
2909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 24107045 - 24107114
Alignment:
| Q |
12 |
aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat |
81 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
24107045 |
aaaggtccaatagtatataaaaaagggaacatagaatagagcgtattcattacatcactctcaagttcat |
24107114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 24103684 - 24103738
Alignment:
| Q |
27 |
tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat |
81 |
Q |
| |
|
|||| ||||||||||||||| || || |||||||| ||||||||||||||||||| |
|
|
| T |
24103684 |
tatatagaagggaacatagagtagagagcattcataacatcactctcaagttcat |
24103738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 3087093 - 3087159
Alignment:
| Q |
15 |
ggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcat |
81 |
Q |
| |
|
||||| || |||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3087093 |
ggtccaatggtatataatgaagggaacacagaatatagcgcattcattacatcactctcaagttcat |
3087159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 4151 - 4062
Alignment:
| Q |
12 |
aaaggtccgatagtatataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaata |
101 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| || ||||||| |||| | ||||||||||||| |||||| || |||| |||| |
|
|
| T |
4151 |
aaaggtccaatggtatataaagaagggaacatagaatagagagcattcaatacaccgctctcaagttcatcgtaagtgttgaaaacaata |
4062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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