View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_34 (Length: 292)
Name: NF2736_low_34
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 7499328 - 7499049
Alignment:
| Q |
1 |
acttgatttgaaatttgatgatgtgccatggcaagatatatcatatgaacctgaatgggagatatatagtttcagaaacaactcttggactaaatttgat |
100 |
Q |
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| T |
7499328 |
acttggtttgtaattttttgatgtgccatggcaagatatatcatatgaacctgaatgggagatatatagtttcagaaacaactcttggactaaatttgat |
7499229 |
T |
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| Q |
101 |
tttgactttcctttgatggagatcccttataattcttatgaaattatccgattctatatggatggaatgtgtcattggtggtataaaagtgattgtcacc |
200 |
Q |
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| T |
7499228 |
tttgactttcctttgatggagatcccttataattcttatgaaattatccaattctatatggatggaatgtgtcattggtggtataaaagtgattgtcacc |
7499129 |
T |
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| Q |
201 |
ttttcgaaacaagtttggtgtcatttgacgtgagcaatgaactctttattacaacacccatgcccagatacaatgatgat |
280 |
Q |
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| T |
7499128 |
ttttcgaaacaagtttggtgtcatttgacgtgagcaatgaactctttattacaacacccatgcccagatacaatgatgat |
7499049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 7489188 - 7488924
Alignment:
| Q |
1 |
acttgatttgaaatttgatgatgtgccatggcaagatatatcatatgaacctgaatgggagatatatagtttcagaaacaactcttggactaaatttgat |
100 |
Q |
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| T |
7489188 |
acttggtttggaatttcttgatgtgccatggcaagatatatcatatgaacctgaatgggagatatatagtttcagaaacaactcttggactaaatttgat |
7489089 |
T |
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| Q |
101 |
tttgactttcctttgatggagatcccttataattcttatgaaattatccgattctatatggatggaatgtgtcattggtggtataaaagtgattgtcacc |
200 |
Q |
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| T |
7489088 |
tttgactttcctttgatggagatcccttataattcttatgaaattgtccgattcaatatggatggaatgtgtcattggtggtataaaagtgattgtcacc |
7488989 |
T |
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| Q |
201 |
ttttcgaaacaagtttggtgtcatttgacgtgagcaatgaactctttattacaacacccatgccc |
265 |
Q |
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| T |
7488988 |
ttttcgaaacaagtttggtgtcatttgacgtgagcaatgaactctttattaaaacacccatgccc |
7488924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 7435515 - 7435474
Alignment:
| Q |
147 |
tccgattctatatggatggaatgtgtcattggtggtataaaa |
188 |
Q |
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| T |
7435515 |
tccgattctacatggatggaatgtgtcattggtgggataaaa |
7435474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 7524344 - 7524303
Alignment:
| Q |
147 |
tccgattctatatggatggaatgtgtcattggtggtataaaa |
188 |
Q |
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| T |
7524344 |
tccgattctacatggatggaatgtgtcattggtgggataaaa |
7524303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 7429390 - 7429322
Alignment:
| Q |
20 |
gatgtgccatggcaagatatatcatatgaacctgaatgggagatatatagtttcagaaacaactcttgg |
88 |
Q |
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| T |
7429390 |
gatgtgccatggaaatatatatcatatcaacccatatgggagatatatagtctaagaagcaactcttgg |
7429322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 7503637 - 7503527
Alignment:
| Q |
151 |
attctatatggatggaatgtgtcattggtggtataaaagtgattgtcaccttttcgaaacaagtttggtgtcatttgacgtgagcaatgaactctttatt |
250 |
Q |
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| T |
7503637 |
attctacattgatggaaaatgtcattggtgcgataaaagttaagtacaccttttctaaatatgtttggtgccattttacttgaacaatgaagtatttatt |
7503538 |
T |
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| Q |
251 |
acaacacccat |
261 |
Q |
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| T |
7503537 |
acaacacccat |
7503527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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